Strain Fitness in Pseudomonas simiae WCS417 around PS417_11835

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11830 and PS417_11835 are separated by 117 nucleotidesPS417_11835 and PS417_11840 are separated by 92 nucleotides PS417_11830: PS417_11830 - membrane protein, at 2,574,028 to 2,574,933 _11830 PS417_11835: PS417_11835 - MFS transporter, at 2,575,051 to 2,576,262 _11835 PS417_11840: PS417_11840 - GntR family transcriptional regulator, at 2,576,355 to 2,577,767 _11840 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -1 0 1at 2574.325 kb on + strand, within PS417_11830at 2574.526 kb on + strand, within PS417_11830at 2574.526 kb on + strand, within PS417_11830at 2574.656 kb on - strand, within PS417_11830at 2574.727 kb on + strand, within PS417_11830at 2574.905 kb on - strandat 2574.905 kb on - strandat 2574.905 kb on - strandat 2574.905 kb on - strandat 2574.905 kb on - strandat 2574.905 kb on - strandat 2574.905 kb on - strandat 2575.071 kb on + strandat 2575.299 kb on + strand, within PS417_11835at 2575.321 kb on + strand, within PS417_11835at 2575.515 kb on - strand, within PS417_11835at 2575.570 kb on - strand, within PS417_11835at 2575.589 kb on + strand, within PS417_11835at 2575.718 kb on + strand, within PS417_11835at 2575.719 kb on - strand, within PS417_11835at 2575.887 kb on - strand, within PS417_11835at 2576.009 kb on + strand, within PS417_11835at 2576.010 kb on - strand, within PS417_11835at 2576.010 kb on - strand, within PS417_11835at 2576.102 kb on + strand, within PS417_11835at 2576.102 kb on + strand, within PS417_11835at 2576.103 kb on - strand, within PS417_11835at 2576.299 kb on - strandat 2576.304 kb on + strandat 2576.305 kb on - strandat 2576.574 kb on + strand, within PS417_11840at 2576.575 kb on - strand, within PS417_11840at 2576.578 kb on + strandat 2576.578 kb on + strand, within PS417_11840at 2576.579 kb on - strand, within PS417_11840at 2576.659 kb on + strand, within PS417_11840at 2576.659 kb on + strand, within PS417_11840at 2576.659 kb on + strand, within PS417_11840at 2576.659 kb on + strand, within PS417_11840at 2576.660 kb on - strand, within PS417_11840at 2576.865 kb on + strand, within PS417_11840at 2576.866 kb on - strand, within PS417_11840at 2576.960 kb on - strand, within PS417_11840at 2577.001 kb on - strand, within PS417_11840at 2577.050 kb on + strand, within PS417_11840at 2577.112 kb on - strand, within PS417_11840at 2577.234 kb on + strand, within PS417_11840at 2577.234 kb on + strand, within PS417_11840at 2577.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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2,574,325 + PS417_11830 0.33 -0.1
2,574,526 + PS417_11830 0.55 +0.0
2,574,526 + PS417_11830 0.55 +0.3
2,574,656 - PS417_11830 0.69 +0.3
2,574,727 + PS417_11830 0.77 +0.6
2,574,905 - -0.6
2,574,905 - +0.0
2,574,905 - -1.1
2,574,905 - -0.1
2,574,905 - -0.1
2,574,905 - +0.3
2,574,905 - +0.1
2,575,071 + -0.2
2,575,299 + PS417_11835 0.20 -0.2
2,575,321 + PS417_11835 0.22 -0.4
2,575,515 - PS417_11835 0.38 -0.6
2,575,570 - PS417_11835 0.43 +0.0
2,575,589 + PS417_11835 0.44 -0.6
2,575,718 + PS417_11835 0.55 +0.1
2,575,719 - PS417_11835 0.55 +0.3
2,575,887 - PS417_11835 0.69 -0.4
2,576,009 + PS417_11835 0.79 -0.3
2,576,010 - PS417_11835 0.79 -1.4
2,576,010 - PS417_11835 0.79 -0.3
2,576,102 + PS417_11835 0.87 +0.2
2,576,102 + PS417_11835 0.87 -0.3
2,576,103 - PS417_11835 0.87 -0.3
2,576,299 - +0.0
2,576,304 + -0.6
2,576,305 - -0.1
2,576,574 + PS417_11840 0.15 -0.1
2,576,575 - PS417_11840 0.16 -0.5
2,576,578 + -0.2
2,576,578 + PS417_11840 0.16 -0.9
2,576,579 - PS417_11840 0.16 -0.7
2,576,659 + PS417_11840 0.22 -0.4
2,576,659 + PS417_11840 0.22 -1.4
2,576,659 + PS417_11840 0.22 +1.3
2,576,659 + PS417_11840 0.22 -0.6
2,576,660 - PS417_11840 0.22 -0.2
2,576,865 + PS417_11840 0.36 -0.1
2,576,866 - PS417_11840 0.36 +0.0
2,576,960 - PS417_11840 0.43 +1.0
2,577,001 - PS417_11840 0.46 +0.3
2,577,050 + PS417_11840 0.49 +0.0
2,577,112 - PS417_11840 0.54 +0.0
2,577,234 + PS417_11840 0.62 -0.2
2,577,234 + PS417_11840 0.62 -0.6
2,577,241 - -0.2

Or see this region's nucleotide sequence