Experiment: 80% Methanol 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10990 and PS417_10995 are separated by 155 nucleotides PS417_10995 and PS417_11000 are separated by 48 nucleotides PS417_11000 and PS417_11005 are separated by 192 nucleotides
PS417_10990: PS417_10990 - TonB-dependent receptor, at 2,353,238 to 2,355,355
_10990
PS417_10995: PS417_10995 - GntR family transcriptional regulator, at 2,355,511 to 2,356,233
_10995
PS417_11000: PS417_11000 - L-arabonate dehydratase (EC 4.2.1.25) (from data) , at 2,356,282 to 2,358,018
_11000
PS417_11005: PS417_11005 - L-arabinose transporter (from data) , at 2,358,211 to 2,359,533
_11005
Position (kb)
2356
2357
2358
2359 Strain fitness (log2 ratio)
-1
0
1
2 at 2355.423 kb on - strand at 2355.433 kb on - strand at 2355.477 kb on + strand at 2355.714 kb on + strand, within PS417_10995 at 2355.715 kb on - strand, within PS417_10995 at 2356.037 kb on + strand, within PS417_10995 at 2356.101 kb on - strand, within PS417_10995 at 2356.237 kb on + strand at 2356.271 kb on + strand at 2356.271 kb on + strand at 2356.272 kb on - strand at 2356.761 kb on - strand, within PS417_11000 at 2356.761 kb on - strand at 2356.935 kb on - strand, within PS417_11000 at 2357.057 kb on + strand, within PS417_11000 at 2357.314 kb on - strand, within PS417_11000 at 2357.327 kb on + strand, within PS417_11000 at 2357.701 kb on + strand at 2357.702 kb on - strand, within PS417_11000 at 2357.702 kb on - strand, within PS417_11000 at 2358.232 kb on - strand at 2358.232 kb on - strand at 2358.395 kb on - strand, within PS417_11005 at 2358.526 kb on + strand, within PS417_11005 at 2358.584 kb on - strand, within PS417_11005 at 2358.586 kb on + strand, within PS417_11005 at 2358.586 kb on + strand, within PS417_11005 at 2358.654 kb on + strand, within PS417_11005 at 2358.790 kb on + strand, within PS417_11005 at 2358.953 kb on - strand, within PS417_11005 at 2358.977 kb on - strand, within PS417_11005
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress remove 2,355,423 - +1.5 2,355,433 - -0.4 2,355,477 + +0.2 2,355,714 + PS417_10995 0.28 -0.6 2,355,715 - PS417_10995 0.28 +0.6 2,356,037 + PS417_10995 0.73 -1.0 2,356,101 - PS417_10995 0.82 +0.4 2,356,237 + -0.9 2,356,271 + +0.2 2,356,271 + -0.9 2,356,272 - -0.2 2,356,761 - PS417_11000 0.28 +0.3 2,356,761 - -0.6 2,356,935 - PS417_11000 0.38 -0.3 2,357,057 + PS417_11000 0.45 -0.1 2,357,314 - PS417_11000 0.59 -0.4 2,357,327 + PS417_11000 0.60 +2.1 2,357,701 + -1.1 2,357,702 - PS417_11000 0.82 +2.1 2,357,702 - PS417_11000 0.82 +0.5 2,358,232 - -0.6 2,358,232 - -0.3 2,358,395 - PS417_11005 0.14 -1.5 2,358,526 + PS417_11005 0.24 -0.6 2,358,584 - PS417_11005 0.28 +0.1 2,358,586 + PS417_11005 0.28 +0.0 2,358,586 + PS417_11005 0.28 -0.2 2,358,654 + PS417_11005 0.33 +0.6 2,358,790 + PS417_11005 0.44 -1.0 2,358,953 - PS417_11005 0.56 -0.5 2,358,977 - PS417_11005 0.58 +1.0
Or see this region's nucleotide sequence