Strain Fitness in Pseudomonas simiae WCS417 around PS417_28280

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28275 and PS417_28280 are separated by 44 nucleotidesPS417_28280 and PS417_28285 overlap by 1 nucleotides PS417_28275: PS417_28275 - cobalamin biosynthesis protein CobW, at 6,106,538 to 6,107,500 _28275 PS417_28280: PS417_28280 - hypothetical protein, at 6,107,545 to 6,108,189 _28280 PS417_28285: PS417_28285 - hypothetical protein, at 6,108,189 to 6,109,397 _28285 Position (kb) 6107 6108 6109Strain fitness (log2 ratio) -1 0 1 2at 6106.944 kb on - strand, within PS417_28275at 6106.966 kb on - strandat 6107.243 kb on - strand, within PS417_28275at 6107.265 kb on - strand, within PS417_28275at 6107.538 kb on + strandat 6107.539 kb on - strandat 6107.539 kb on - strandat 6107.622 kb on - strand, within PS417_28280at 6107.774 kb on + strand, within PS417_28280at 6107.775 kb on - strand, within PS417_28280at 6107.860 kb on - strand, within PS417_28280at 6107.928 kb on - strand, within PS417_28280at 6108.208 kb on + strandat 6108.208 kb on + strandat 6108.425 kb on + strand, within PS417_28285at 6108.426 kb on - strand, within PS417_28285at 6108.503 kb on + strand, within PS417_28285at 6108.504 kb on - strand, within PS417_28285at 6109.023 kb on - strand, within PS417_28285at 6109.091 kb on + strand, within PS417_28285

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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6,106,944 - PS417_28275 0.42 +0.5
6,106,966 - +0.1
6,107,243 - PS417_28275 0.73 +0.0
6,107,265 - PS417_28275 0.75 -0.1
6,107,538 + -0.1
6,107,539 - -0.0
6,107,539 - +0.3
6,107,622 - PS417_28280 0.12 -1.0
6,107,774 + PS417_28280 0.36 +1.2
6,107,775 - PS417_28280 0.36 -0.9
6,107,860 - PS417_28280 0.49 -0.4
6,107,928 - PS417_28280 0.59 -0.8
6,108,208 + -0.2
6,108,208 + +0.6
6,108,425 + PS417_28285 0.20 +2.2
6,108,426 - PS417_28285 0.20 +0.2
6,108,503 + PS417_28285 0.26 -0.1
6,108,504 - PS417_28285 0.26 +1.2
6,109,023 - PS417_28285 0.69 -0.3
6,109,091 + PS417_28285 0.75 +1.0

Or see this region's nucleotide sequence