Strain Fitness in Pseudomonas simiae WCS417 around PS417_28035

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28025 and PS417_28030 are separated by 111 nucleotidesPS417_28030 and PS417_28035 are separated by 155 nucleotidesPS417_28035 and PS417_28040 are separated by 45 nucleotides PS417_28025: PS417_28025 - 4-hydroxybenzoate polyprenyltransferase, at 6,048,453 to 6,049,343 _28025 PS417_28030: PS417_28030 - hypothetical protein, at 6,049,455 to 6,049,832 _28030 PS417_28035: PS417_28035 - transcriptional regulator PhoB, at 6,049,988 to 6,050,677 _28035 PS417_28040: PS417_28040 - histidine kinase, at 6,050,723 to 6,052,045 _28040 Position (kb) 6049 6050 6051Strain fitness (log2 ratio) -1 0 1 2at 6049.529 kb on - strand, within PS417_28030at 6049.534 kb on + strand, within PS417_28030at 6049.534 kb on + strand, within PS417_28030at 6049.535 kb on - strand, within PS417_28030at 6049.535 kb on - strand, within PS417_28030at 6049.535 kb on - strand, within PS417_28030at 6049.552 kb on + strand, within PS417_28030at 6049.611 kb on - strand, within PS417_28030at 6049.825 kb on + strandat 6049.825 kb on + strandat 6049.825 kb on + strandat 6049.825 kb on + strandat 6049.825 kb on + strandat 6049.826 kb on - strandat 6049.826 kb on - strandat 6049.826 kb on - strandat 6049.877 kb on - strandat 6049.893 kb on - strandat 6049.933 kb on - strandat 6049.945 kb on + strandat 6049.946 kb on - strandat 6050.069 kb on + strand, within PS417_28035at 6050.294 kb on + strand, within PS417_28035at 6050.294 kb on + strand, within PS417_28035at 6050.295 kb on - strand, within PS417_28035at 6050.295 kb on - strand, within PS417_28035at 6050.510 kb on + strand, within PS417_28035at 6050.555 kb on + strandat 6050.555 kb on + strand, within PS417_28035at 6050.555 kb on + strand, within PS417_28035at 6050.556 kb on - strand, within PS417_28035at 6050.720 kb on + strandat 6050.721 kb on - strandat 6050.807 kb on + strandat 6050.810 kb on + strandat 6050.844 kb on - strandat 6051.377 kb on - strand, within PS417_28040

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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6,049,529 - PS417_28030 0.20 +1.6
6,049,534 + PS417_28030 0.21 +0.8
6,049,534 + PS417_28030 0.21 +0.6
6,049,535 - PS417_28030 0.21 -0.3
6,049,535 - PS417_28030 0.21 +0.4
6,049,535 - PS417_28030 0.21 +0.2
6,049,552 + PS417_28030 0.26 +0.5
6,049,611 - PS417_28030 0.41 +0.2
6,049,825 + +0.5
6,049,825 + +0.3
6,049,825 + +0.6
6,049,825 + -0.1
6,049,825 + -0.5
6,049,826 - -0.8
6,049,826 - -0.2
6,049,826 - -1.3
6,049,877 - -0.4
6,049,893 - -1.2
6,049,933 - +0.3
6,049,945 + +0.1
6,049,946 - -1.0
6,050,069 + PS417_28035 0.12 +0.2
6,050,294 + PS417_28035 0.44 -0.3
6,050,294 + PS417_28035 0.44 -0.6
6,050,295 - PS417_28035 0.44 -1.4
6,050,295 - PS417_28035 0.44 -0.5
6,050,510 + PS417_28035 0.76 -0.6
6,050,555 + +2.2
6,050,555 + PS417_28035 0.82 -1.4
6,050,555 + PS417_28035 0.82 -1.0
6,050,556 - PS417_28035 0.82 +0.1
6,050,720 + -0.2
6,050,721 - -0.6
6,050,807 + +0.6
6,050,810 + +0.0
6,050,844 - -0.5
6,051,377 - PS417_28040 0.49 +0.5

Or see this region's nucleotide sequence