Strain Fitness in Pseudomonas simiae WCS417 around PS417_27870

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27865 and PS417_27870 are separated by 8 nucleotidesPS417_27870 and PS417_27875 are separated by 127 nucleotides PS417_27865: PS417_27865 - LysR family transcriptional regulator, at 6,005,939 to 6,006,859 _27865 PS417_27870: PS417_27870 - ATP-dependent DNA helicase RecG, at 6,006,868 to 6,008,943 _27870 PS417_27875: PS417_27875 - histidine kinase, at 6,009,071 to 6,010,471 _27875 Position (kb) 6006 6007 6008 6009Strain fitness (log2 ratio) -2 -1 0 1at 6005.938 kb on + strandat 6005.955 kb on + strandat 6005.956 kb on - strandat 6005.956 kb on - strandat 6006.305 kb on + strand, within PS417_27865at 6006.305 kb on + strand, within PS417_27865at 6006.306 kb on - strand, within PS417_27865at 6006.306 kb on - strand, within PS417_27865at 6006.857 kb on + strandat 6006.857 kb on + strandat 6006.857 kb on + strandat 6007.246 kb on + strand, within PS417_27870at 6007.247 kb on - strand, within PS417_27870at 6008.119 kb on - strand, within PS417_27870at 6008.321 kb on - strand, within PS417_27870at 6008.383 kb on + strand, within PS417_27870at 6008.384 kb on - strand, within PS417_27870at 6008.526 kb on - strand, within PS417_27870at 6008.831 kb on + strandat 6008.957 kb on - strandat 6008.978 kb on + strandat 6009.007 kb on + strandat 6009.038 kb on + strandat 6009.038 kb on + strandat 6009.039 kb on - strandat 6009.039 kb on - strandat 6009.039 kb on - strandat 6009.039 kb on - strandat 6009.052 kb on + strandat 6009.207 kb on + strandat 6009.208 kb on - strandat 6009.401 kb on + strand, within PS417_27875at 6009.791 kb on + strand, within PS417_27875at 6009.791 kb on + strand, within PS417_27875

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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6,005,938 + +1.1
6,005,955 + -1.9
6,005,956 - -2.1
6,005,956 - +0.5
6,006,305 + PS417_27865 0.40 -0.7
6,006,305 + PS417_27865 0.40 +0.4
6,006,306 - PS417_27865 0.40 -0.8
6,006,306 - PS417_27865 0.40 -1.1
6,006,857 + +0.1
6,006,857 + +0.2
6,006,857 + -0.0
6,007,246 + PS417_27870 0.18 -0.4
6,007,247 - PS417_27870 0.18 -1.3
6,008,119 - PS417_27870 0.60 -1.1
6,008,321 - PS417_27870 0.70 +1.2
6,008,383 + PS417_27870 0.73 -1.2
6,008,384 - PS417_27870 0.73 -0.0
6,008,526 - PS417_27870 0.80 +0.2
6,008,831 + -0.8
6,008,957 - -0.4
6,008,978 + +0.0
6,009,007 + +0.2
6,009,038 + -0.2
6,009,038 + -2.4
6,009,039 - +0.8
6,009,039 - +0.7
6,009,039 - +0.8
6,009,039 - +0.6
6,009,052 + +0.2
6,009,207 + +0.1
6,009,208 - +1.3
6,009,401 + PS417_27875 0.24 +0.5
6,009,791 + PS417_27875 0.51 +1.4
6,009,791 + PS417_27875 0.51 +1.1

Or see this region's nucleotide sequence