Strain Fitness in Pseudomonas simiae WCS417 around PS417_26345

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26340 and PS417_26345 are separated by 161 nucleotidesPS417_26345 and PS417_26350 are separated by 180 nucleotides PS417_26340: PS417_26340 - betaine-aldehyde dehydrogenase, at 5,693,477 to 5,694,949 _26340 PS417_26345: PS417_26345 - choline dehydrogenase, at 5,695,111 to 5,696,814 _26345 PS417_26350: PS417_26350 - peptidase C69, at 5,696,995 to 5,698,437 _26350 Position (kb) 5695 5696 5697Strain fitness (log2 ratio) -1 0 1at 5694.315 kb on - strand, within PS417_26340at 5694.495 kb on - strand, within PS417_26340at 5694.508 kb on + strand, within PS417_26340at 5694.509 kb on - strand, within PS417_26340at 5694.669 kb on - strand, within PS417_26340at 5694.788 kb on - strand, within PS417_26340at 5694.947 kb on + strandat 5694.948 kb on - strandat 5694.948 kb on - strandat 5694.948 kb on - strandat 5694.963 kb on + strandat 5694.963 kb on + strandat 5694.963 kb on + strandat 5694.963 kb on + strandat 5694.970 kb on + strandat 5694.971 kb on - strandat 5694.971 kb on - strandat 5694.971 kb on - strandat 5694.972 kb on + strandat 5694.972 kb on + strandat 5694.973 kb on - strandat 5695.034 kb on - strandat 5695.034 kb on - strandat 5695.034 kb on - strandat 5695.034 kb on - strandat 5695.037 kb on + strandat 5695.037 kb on + strandat 5695.037 kb on + strandat 5695.038 kb on - strandat 5695.038 kb on - strandat 5695.038 kb on - strandat 5695.088 kb on - strandat 5695.088 kb on - strandat 5695.129 kb on + strandat 5695.129 kb on + strandat 5695.130 kb on - strandat 5695.130 kb on - strandat 5695.244 kb on + strandat 5695.403 kb on - strand, within PS417_26345at 5695.403 kb on - strand, within PS417_26345at 5695.614 kb on - strand, within PS417_26345at 5695.614 kb on - strand, within PS417_26345at 5695.683 kb on + strand, within PS417_26345at 5695.877 kb on + strand, within PS417_26345at 5696.024 kb on - strand, within PS417_26345at 5696.077 kb on + strand, within PS417_26345at 5696.228 kb on - strand, within PS417_26345at 5696.228 kb on - strand, within PS417_26345at 5696.356 kb on + strand, within PS417_26345at 5696.356 kb on + strand, within PS417_26345at 5696.356 kb on + strand, within PS417_26345at 5696.357 kb on - strand, within PS417_26345at 5696.357 kb on - strand, within PS417_26345at 5696.469 kb on + strand, within PS417_26345at 5696.749 kb on + strandat 5696.749 kb on + strandat 5696.750 kb on - strandat 5696.812 kb on + strandat 5697.074 kb on + strandat 5697.074 kb on + strandat 5697.091 kb on + strandat 5697.319 kb on + strand, within PS417_26350at 5697.368 kb on - strand, within PS417_26350at 5697.509 kb on + strand, within PS417_26350at 5697.509 kb on + strand, within PS417_26350at 5697.626 kb on + strand, within PS417_26350at 5697.796 kb on + strand, within PS417_26350

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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5,694,315 - PS417_26340 0.57 -0.7
5,694,495 - PS417_26340 0.69 -0.3
5,694,508 + PS417_26340 0.70 -1.7
5,694,509 - PS417_26340 0.70 -0.5
5,694,669 - PS417_26340 0.81 -0.3
5,694,788 - PS417_26340 0.89 -0.4
5,694,947 + -1.2
5,694,948 - -0.2
5,694,948 - +0.2
5,694,948 - -0.2
5,694,963 + -0.5
5,694,963 + -0.3
5,694,963 + -0.3
5,694,963 + -0.4
5,694,970 + -0.0
5,694,971 - +0.5
5,694,971 - -0.3
5,694,971 - -0.8
5,694,972 + -0.5
5,694,972 + -0.4
5,694,973 - +0.1
5,695,034 - +0.5
5,695,034 - -0.1
5,695,034 - -0.3
5,695,034 - +0.7
5,695,037 + +0.4
5,695,037 + +0.3
5,695,037 + -0.5
5,695,038 - +0.2
5,695,038 - +0.3
5,695,038 - +0.5
5,695,088 - +0.1
5,695,088 - -0.5
5,695,129 + -0.1
5,695,129 + -0.3
5,695,130 - -0.0
5,695,130 - -0.7
5,695,244 + -0.1
5,695,403 - PS417_26345 0.17 -1.2
5,695,403 - PS417_26345 0.17 -0.5
5,695,614 - PS417_26345 0.30 +0.1
5,695,614 - PS417_26345 0.30 -0.9
5,695,683 + PS417_26345 0.34 +0.0
5,695,877 + PS417_26345 0.45 -0.1
5,696,024 - PS417_26345 0.54 -0.6
5,696,077 + PS417_26345 0.57 +0.1
5,696,228 - PS417_26345 0.66 -1.2
5,696,228 - PS417_26345 0.66 -1.4
5,696,356 + PS417_26345 0.73 -0.1
5,696,356 + PS417_26345 0.73 -0.3
5,696,356 + PS417_26345 0.73 +0.5
5,696,357 - PS417_26345 0.73 -0.6
5,696,357 - PS417_26345 0.73 -0.5
5,696,469 + PS417_26345 0.80 -1.5
5,696,749 + -0.2
5,696,749 + -0.7
5,696,750 - -0.7
5,696,812 + +0.1
5,697,074 + +0.2
5,697,074 + -0.5
5,697,091 + -0.1
5,697,319 + PS417_26350 0.22 +0.6
5,697,368 - PS417_26350 0.26 +0.2
5,697,509 + PS417_26350 0.36 -0.5
5,697,509 + PS417_26350 0.36 +0.2
5,697,626 + PS417_26350 0.44 -0.0
5,697,796 + PS417_26350 0.56 +0.0

Or see this region's nucleotide sequence