Strain Fitness in Pseudomonas simiae WCS417 around PS417_24840

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24830 and PS417_24835 are separated by 305 nucleotidesPS417_24835 and PS417_24840 are separated by 6 nucleotidesPS417_24840 and PS417_24845 are separated by 109 nucleotidesPS417_24845 and PS417_24850 are separated by 214 nucleotides PS417_24830: PS417_24830 - GNAT family acetyltransferase, at 5,386,297 to 5,386,755 _24830 PS417_24835: PS417_24835 - hypothetical protein, at 5,387,061 to 5,387,717 _24835 PS417_24840: PS417_24840 - hypothetical protein, at 5,387,724 to 5,388,539 _24840 PS417_24845: PS417_24845 - inorganic pyrophosphatase, at 5,388,649 to 5,389,176 _24845 PS417_24850: PS417_24850 - transcriptional regulator, at 5,389,391 to 5,390,167 _24850 Position (kb) 5387 5388 5389Strain fitness (log2 ratio) -2 -1 0 1at 5386.729 kb on + strandat 5386.730 kb on - strandat 5386.887 kb on + strandat 5386.887 kb on + strandat 5386.887 kb on + strandat 5386.888 kb on - strandat 5386.954 kb on - strandat 5386.975 kb on + strandat 5386.990 kb on - strandat 5386.990 kb on - strandat 5386.990 kb on - strandat 5386.990 kb on - strandat 5386.998 kb on - strandat 5387.103 kb on + strandat 5387.120 kb on - strandat 5387.127 kb on + strand, within PS417_24835at 5387.143 kb on - strandat 5387.316 kb on + strand, within PS417_24835at 5387.316 kb on + strand, within PS417_24835at 5387.316 kb on + strand, within PS417_24835at 5387.317 kb on - strand, within PS417_24835at 5387.317 kb on - strand, within PS417_24835at 5387.317 kb on - strand, within PS417_24835at 5388.168 kb on + strand, within PS417_24840at 5388.291 kb on + strand, within PS417_24840at 5388.292 kb on - strand, within PS417_24840at 5388.466 kb on - strandat 5388.544 kb on - strandat 5388.582 kb on + strandat 5389.310 kb on + strandat 5389.316 kb on + strandat 5389.317 kb on - strandat 5389.317 kb on - strandat 5389.317 kb on - strandat 5389.328 kb on + strandat 5389.329 kb on - strandat 5389.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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5,386,729 + -0.0
5,386,730 - -0.2
5,386,887 + -0.6
5,386,887 + +0.4
5,386,887 + +0.6
5,386,888 - -0.7
5,386,954 - +0.3
5,386,975 + -0.1
5,386,990 - -0.8
5,386,990 - -0.3
5,386,990 - +0.2
5,386,990 - +0.9
5,386,998 - +0.1
5,387,103 + +0.0
5,387,120 - +1.5
5,387,127 + PS417_24835 0.10 +0.0
5,387,143 - -0.3
5,387,316 + PS417_24835 0.39 -0.1
5,387,316 + PS417_24835 0.39 +0.4
5,387,316 + PS417_24835 0.39 -0.2
5,387,317 - PS417_24835 0.39 +0.4
5,387,317 - PS417_24835 0.39 +1.4
5,387,317 - PS417_24835 0.39 +0.1
5,388,168 + PS417_24840 0.54 +0.1
5,388,291 + PS417_24840 0.69 -1.0
5,388,292 - PS417_24840 0.70 -1.9
5,388,466 - -0.1
5,388,544 - -0.6
5,388,582 + -0.2
5,389,310 + -0.2
5,389,316 + -0.5
5,389,317 - -0.0
5,389,317 - +0.9
5,389,317 - +0.3
5,389,328 + +0.5
5,389,329 - -1.3
5,389,397 - +0.6

Or see this region's nucleotide sequence