Strain Fitness in Pseudomonas simiae WCS417 around PS417_21695

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21690 and PS417_21695 are separated by 152 nucleotidesPS417_21695 and PS417_21700 overlap by 1 nucleotides PS417_21690: PS417_21690 - N-succinylarginine dihydrolase, at 4,704,211 to 4,705,557 _21690 PS417_21695: PS417_21695 - succinylglutamate-semialdehyde dehydrogenase, at 4,705,710 to 4,707,176 _21695 PS417_21700: PS417_21700 - arginine N-succinyltransferase, at 4,707,176 to 4,708,201 _21700 Position (kb) 4705 4706 4707 4708Strain fitness (log2 ratio) -1 0 1 2at 4704.767 kb on + strand, within PS417_21690at 4704.767 kb on + strandat 4704.767 kb on + strand, within PS417_21690at 4704.768 kb on - strand, within PS417_21690at 4704.851 kb on + strand, within PS417_21690at 4705.089 kb on + strand, within PS417_21690at 4705.089 kb on + strand, within PS417_21690at 4705.505 kb on + strandat 4705.505 kb on + strandat 4705.510 kb on - strandat 4705.547 kb on + strandat 4705.587 kb on + strandat 4705.662 kb on + strandat 4705.663 kb on - strandat 4705.663 kb on - strandat 4705.722 kb on + strandat 4705.749 kb on + strandat 4705.807 kb on + strandat 4705.807 kb on + strandat 4705.973 kb on - strand, within PS417_21695at 4706.364 kb on - strand, within PS417_21695at 4706.387 kb on - strand, within PS417_21695at 4706.595 kb on + strand, within PS417_21695at 4706.840 kb on - strand, within PS417_21695at 4707.163 kb on + strandat 4707.164 kb on - strandat 4707.164 kb on - strandat 4707.463 kb on - strand, within PS417_21700at 4707.631 kb on - strand, within PS417_21700at 4707.901 kb on + strand, within PS417_21700at 4707.901 kb on + strand, within PS417_21700at 4707.902 kb on - strand, within PS417_21700at 4707.948 kb on + strand, within PS417_21700

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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4,704,767 + PS417_21690 0.41 -1.1
4,704,767 + -0.3
4,704,767 + PS417_21690 0.41 -0.3
4,704,768 - PS417_21690 0.41 -0.3
4,704,851 + PS417_21690 0.48 -0.3
4,705,089 + PS417_21690 0.65 +0.3
4,705,089 + PS417_21690 0.65 +0.1
4,705,505 + -0.3
4,705,505 + -0.2
4,705,510 - +0.2
4,705,547 + -0.1
4,705,587 + +0.9
4,705,662 + +0.5
4,705,663 - +0.8
4,705,663 - +2.2
4,705,722 + -0.6
4,705,749 + +0.8
4,705,807 + -0.1
4,705,807 + -0.1
4,705,973 - PS417_21695 0.18 +0.1
4,706,364 - PS417_21695 0.45 -1.2
4,706,387 - PS417_21695 0.46 -1.2
4,706,595 + PS417_21695 0.60 +0.0
4,706,840 - PS417_21695 0.77 -0.9
4,707,163 + -0.6
4,707,164 - -1.7
4,707,164 - -0.2
4,707,463 - PS417_21700 0.28 -0.4
4,707,631 - PS417_21700 0.44 +0.1
4,707,901 + PS417_21700 0.71 -1.5
4,707,901 + PS417_21700 0.71 +0.2
4,707,902 - PS417_21700 0.71 -0.3
4,707,948 + PS417_21700 0.75 -0.1

Or see this region's nucleotide sequence