Strain Fitness in Pseudomonas simiae WCS417 around PS417_20910

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20905 and PS417_20910 are separated by 226 nucleotidesPS417_20910 and PS417_20915 are separated by 37 nucleotidesPS417_20915 and PS417_20920 are separated by 238 nucleotides PS417_20905: PS417_20905 - GntR family transcriptional regulator, at 4,545,475 to 4,546,239 _20905 PS417_20910: PS417_20910 - membrane protein, at 4,546,466 to 4,547,656 _20910 PS417_20915: PS417_20915 - hypothetical protein, at 4,547,694 to 4,548,038 _20915 PS417_20920: PS417_20920 - D-alanyl-D-alanine carboxypeptidase, at 4,548,277 to 4,549,737 _20920 Position (kb) 4546 4547 4548Strain fitness (log2 ratio) -1 0 1at 4545.476 kb on + strandat 4545.476 kb on + strandat 4545.476 kb on + strandat 4545.476 kb on + strandat 4545.477 kb on - strandat 4545.586 kb on - strand, within PS417_20905at 4546.278 kb on - strandat 4546.281 kb on - strandat 4546.307 kb on - strandat 4546.307 kb on - strandat 4546.332 kb on - strandat 4546.382 kb on + strandat 4546.398 kb on + strandat 4546.410 kb on + strandat 4546.781 kb on + strand, within PS417_20910at 4546.781 kb on + strand, within PS417_20910at 4546.781 kb on + strand, within PS417_20910at 4546.781 kb on + strand, within PS417_20910at 4546.781 kb on + strand, within PS417_20910at 4546.782 kb on - strand, within PS417_20910at 4546.782 kb on - strand, within PS417_20910at 4546.782 kb on - strand, within PS417_20910at 4546.782 kb on - strand, within PS417_20910at 4546.782 kb on - strand, within PS417_20910at 4546.782 kb on - strand, within PS417_20910at 4546.965 kb on - strand, within PS417_20910at 4546.994 kb on + strand, within PS417_20910at 4546.994 kb on + strand, within PS417_20910at 4547.355 kb on - strand, within PS417_20910at 4547.655 kb on - strandat 4547.685 kb on + strandat 4547.689 kb on + strandat 4547.690 kb on - strandat 4547.690 kb on - strandat 4547.692 kb on + strandat 4547.693 kb on - strandat 4547.699 kb on + strandat 4547.852 kb on - strand, within PS417_20915at 4547.869 kb on + strand, within PS417_20915at 4547.870 kb on - strand, within PS417_20915at 4548.053 kb on + strandat 4548.054 kb on - strandat 4548.058 kb on - strandat 4548.058 kb on - strandat 4548.076 kb on - strandat 4548.076 kb on - strandat 4548.076 kb on - strandat 4548.177 kb on - strandat 4548.227 kb on - strandat 4548.269 kb on + strandat 4548.276 kb on + strandat 4548.276 kb on + strandat 4548.277 kb on - strandat 4548.521 kb on - strand, within PS417_20920at 4548.571 kb on + strand, within PS417_20920at 4548.572 kb on - strand, within PS417_20920

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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4,545,476 + +0.0
4,545,476 + +0.2
4,545,476 + +0.1
4,545,476 + +0.2
4,545,477 - -0.2
4,545,586 - PS417_20905 0.15 -1.2
4,546,278 - -0.3
4,546,281 - -0.0
4,546,307 - +0.2
4,546,307 - -0.0
4,546,332 - +0.3
4,546,382 + +0.3
4,546,398 + -0.5
4,546,410 + +0.7
4,546,781 + PS417_20910 0.26 +1.5
4,546,781 + PS417_20910 0.26 +0.5
4,546,781 + PS417_20910 0.26 -0.0
4,546,781 + PS417_20910 0.26 -1.6
4,546,781 + PS417_20910 0.26 -0.2
4,546,782 - PS417_20910 0.27 -0.5
4,546,782 - PS417_20910 0.27 -0.1
4,546,782 - PS417_20910 0.27 +1.0
4,546,782 - PS417_20910 0.27 +1.0
4,546,782 - PS417_20910 0.27 -0.7
4,546,782 - PS417_20910 0.27 +0.1
4,546,965 - PS417_20910 0.42 -0.9
4,546,994 + PS417_20910 0.44 -0.0
4,546,994 + PS417_20910 0.44 +1.4
4,547,355 - PS417_20910 0.75 +0.8
4,547,655 - -0.8
4,547,685 + +0.4
4,547,689 + +1.4
4,547,690 - +0.2
4,547,690 - -0.1
4,547,692 + -0.6
4,547,693 - +1.1
4,547,699 + -0.3
4,547,852 - PS417_20915 0.46 -0.4
4,547,869 + PS417_20915 0.51 -0.3
4,547,870 - PS417_20915 0.51 +0.6
4,548,053 + -1.1
4,548,054 - -0.4
4,548,058 - -0.2
4,548,058 - +0.3
4,548,076 - -1.0
4,548,076 - +0.2
4,548,076 - -0.0
4,548,177 - +0.6
4,548,227 - +0.1
4,548,269 + +0.9
4,548,276 + +0.1
4,548,276 + +0.3
4,548,277 - -0.0
4,548,521 - PS417_20920 0.17 +0.6
4,548,571 + PS417_20920 0.20 +0.1
4,548,572 - PS417_20920 0.20 +0.1

Or see this region's nucleotide sequence