Strain Fitness in Pseudomonas simiae WCS417 around PS417_18455

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18450 and PS417_18455 are separated by 111 nucleotidesPS417_18455 and PS417_18460 are separated by 42 nucleotidesPS417_18460 and PS417_18465 overlap by 4 nucleotides PS417_18450: PS417_18450 - hydrolase, at 4,013,037 to 4,013,807 _18450 PS417_18455: PS417_18455 - hypothetical protein, at 4,013,919 to 4,014,164 _18455 PS417_18460: PS417_18460 - transcriptional regulator, at 4,014,207 to 4,014,878 _18460 PS417_18465: PS417_18465 - histidine kinase, at 4,014,875 to 4,016,275 _18465 Position (kb) 4013 4014 4015Strain fitness (log2 ratio) -1 0 1at 4012.970 kb on + strandat 4012.970 kb on + strandat 4013.014 kb on + strandat 4013.383 kb on - strand, within PS417_18450at 4013.440 kb on - strand, within PS417_18450at 4013.518 kb on - strand, within PS417_18450at 4013.518 kb on - strand, within PS417_18450at 4013.559 kb on + strandat 4013.559 kb on + strand, within PS417_18450at 4013.559 kb on + strand, within PS417_18450at 4013.560 kb on - strand, within PS417_18450at 4013.805 kb on + strandat 4013.806 kb on - strandat 4013.817 kb on + strandat 4013.817 kb on + strandat 4013.931 kb on - strandat 4014.054 kb on + strand, within PS417_18455at 4014.055 kb on - strand, within PS417_18455at 4014.090 kb on + strand, within PS417_18455at 4014.220 kb on + strandat 4014.249 kb on + strandat 4014.279 kb on + strand, within PS417_18460at 4014.465 kb on - strand, within PS417_18460at 4014.660 kb on - strand, within PS417_18460at 4014.894 kb on - strandat 4015.022 kb on + strand, within PS417_18465

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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4,012,970 + -0.0
4,012,970 + -0.3
4,013,014 + -1.1
4,013,383 - PS417_18450 0.45 +1.3
4,013,440 - PS417_18450 0.52 -0.6
4,013,518 - PS417_18450 0.62 +0.5
4,013,518 - PS417_18450 0.62 +1.7
4,013,559 + -0.2
4,013,559 + PS417_18450 0.68 -0.4
4,013,559 + PS417_18450 0.68 +0.7
4,013,560 - PS417_18450 0.68 -0.6
4,013,805 + -0.2
4,013,806 - -0.0
4,013,817 + -0.1
4,013,817 + -1.0
4,013,931 - +0.1
4,014,054 + PS417_18455 0.55 -0.5
4,014,055 - PS417_18455 0.55 -1.1
4,014,090 + PS417_18455 0.70 -1.0
4,014,220 + -0.1
4,014,249 + +0.6
4,014,279 + PS417_18460 0.11 -0.1
4,014,465 - PS417_18460 0.38 +0.5
4,014,660 - PS417_18460 0.67 -0.4
4,014,894 - -0.5
4,015,022 + PS417_18465 0.10 +0.1

Or see this region's nucleotide sequence