Strain Fitness in Pseudomonas simiae WCS417 around PS417_16475

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16470 and PS417_16475 are separated by 16 nucleotidesPS417_16475 and PS417_16480 overlap by 1 nucleotides PS417_16470: PS417_16470 - seryl-tRNA synthetase, at 3,597,703 to 3,598,983 _16470 PS417_16475: PS417_16475 - camphor resistance protein CrcB, at 3,599,000 to 3,599,374 _16475 PS417_16480: PS417_16480 - recombination factor protein RarA, at 3,599,374 to 3,600,696 _16480 Position (kb) 3598 3599 3600Strain fitness (log2 ratio) -1 0 1at 3599.151 kb on - strand, within PS417_16475at 3599.218 kb on - strand, within PS417_16475at 3599.218 kb on - strand, within PS417_16475at 3599.330 kb on - strand, within PS417_16475at 3599.358 kb on - strandat 3599.504 kb on + strandat 3599.546 kb on + strand, within PS417_16480at 3599.669 kb on + strand, within PS417_16480at 3599.703 kb on - strand, within PS417_16480at 3599.703 kb on - strand, within PS417_16480at 3599.928 kb on + strand, within PS417_16480at 3599.928 kb on + strand, within PS417_16480at 3599.929 kb on - strand, within PS417_16480at 3599.952 kb on - strand, within PS417_16480at 3599.952 kb on - strand, within PS417_16480at 3600.224 kb on + strand, within PS417_16480at 3600.225 kb on - strand, within PS417_16480at 3600.225 kb on - strand, within PS417_16480at 3600.317 kb on + strand, within PS417_16480at 3600.318 kb on - strand, within PS417_16480at 3600.318 kb on - strand, within PS417_16480at 3600.318 kb on - strand, within PS417_16480

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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3,599,151 - PS417_16475 0.40 +0.5
3,599,218 - PS417_16475 0.58 -0.6
3,599,218 - PS417_16475 0.58 -1.1
3,599,330 - PS417_16475 0.88 -0.2
3,599,358 - -0.3
3,599,504 + -0.2
3,599,546 + PS417_16480 0.13 -0.1
3,599,669 + PS417_16480 0.22 -0.5
3,599,703 - PS417_16480 0.25 -0.6
3,599,703 - PS417_16480 0.25 +0.0
3,599,928 + PS417_16480 0.42 -0.2
3,599,928 + PS417_16480 0.42 -0.1
3,599,929 - PS417_16480 0.42 +0.1
3,599,952 - PS417_16480 0.44 -0.3
3,599,952 - PS417_16480 0.44 -0.1
3,600,224 + PS417_16480 0.64 -1.0
3,600,225 - PS417_16480 0.64 -0.0
3,600,225 - PS417_16480 0.64 -0.2
3,600,317 + PS417_16480 0.71 -0.6
3,600,318 - PS417_16480 0.71 -0.3
3,600,318 - PS417_16480 0.71 +0.1
3,600,318 - PS417_16480 0.71 +0.2

Or see this region's nucleotide sequence