Strain Fitness in Pseudomonas simiae WCS417 around PS417_12525

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12515 and PS417_12520 are separated by 33 nucleotidesPS417_12520 and PS417_12525 are separated by 163 nucleotidesPS417_12525 and PS417_12530 overlap by 8 nucleotidesPS417_12530 and PS417_12535 are separated by 81 nucleotides PS417_12515: PS417_12515 - lactate dehydrogenase, at 2,724,045 to 2,725,082 _12515 PS417_12520: PS417_12520 - hypothetical protein, at 2,725,116 to 2,725,436 _12520 PS417_12525: PS417_12525 - hypothetical protein, at 2,725,600 to 2,725,854 _12525 PS417_12530: PS417_12530 - LysR family transcriptional regulator, at 2,725,847 to 2,726,740 _12530 PS417_12535: PS417_12535 - nitrilase, at 2,726,822 to 2,727,748 _12535 Position (kb) 2725 2726Strain fitness (log2 ratio) -1 0 1at 2725.030 kb on + strandat 2725.122 kb on - strandat 2725.202 kb on - strand, within PS417_12520at 2725.202 kb on - strand, within PS417_12520at 2725.202 kb on - strand, within PS417_12520at 2725.557 kb on + strandat 2725.557 kb on + strandat 2725.558 kb on - strandat 2725.558 kb on - strandat 2725.558 kb on - strandat 2725.558 kb on - strandat 2725.558 kb on - strandat 2725.564 kb on + strandat 2725.564 kb on + strandat 2725.565 kb on - strandat 2725.565 kb on - strandat 2725.565 kb on - strandat 2725.565 kb on - strandat 2725.565 kb on - strandat 2725.577 kb on - strandat 2725.592 kb on - strandat 2725.592 kb on - strandat 2725.669 kb on + strand, within PS417_12525at 2725.669 kb on + strand, within PS417_12525at 2725.669 kb on + strand, within PS417_12525at 2725.744 kb on - strand, within PS417_12525at 2725.852 kb on + strandat 2725.852 kb on + strandat 2725.853 kb on - strandat 2726.081 kb on + strand, within PS417_12530at 2726.237 kb on + strand, within PS417_12530at 2726.238 kb on - strand, within PS417_12530at 2726.452 kb on - strand, within PS417_12530at 2726.589 kb on + strand, within PS417_12530at 2726.589 kb on + strand, within PS417_12530at 2726.589 kb on + strand, within PS417_12530at 2726.589 kb on + strand, within PS417_12530at 2726.590 kb on - strand, within PS417_12530at 2726.590 kb on - strand, within PS417_12530at 2726.590 kb on - strand, within PS417_12530at 2726.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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2,725,030 + +0.5
2,725,122 - +1.1
2,725,202 - PS417_12520 0.27 +0.8
2,725,202 - PS417_12520 0.27 -0.1
2,725,202 - PS417_12520 0.27 +0.6
2,725,557 + +0.1
2,725,557 + -0.4
2,725,558 - -0.5
2,725,558 - -0.2
2,725,558 - -0.4
2,725,558 - +0.4
2,725,558 - -0.7
2,725,564 + -0.4
2,725,564 + -0.3
2,725,565 - -0.4
2,725,565 - -0.1
2,725,565 - -0.2
2,725,565 - -0.6
2,725,565 - +0.3
2,725,577 - -0.5
2,725,592 - -0.7
2,725,592 - -0.2
2,725,669 + PS417_12525 0.27 -0.7
2,725,669 + PS417_12525 0.27 -0.1
2,725,669 + PS417_12525 0.27 -0.5
2,725,744 - PS417_12525 0.56 -1.1
2,725,852 + -0.2
2,725,852 + -0.2
2,725,853 - +0.2
2,726,081 + PS417_12530 0.26 +0.1
2,726,237 + PS417_12530 0.44 +0.3
2,726,238 - PS417_12530 0.44 -0.1
2,726,452 - PS417_12530 0.68 +0.3
2,726,589 + PS417_12530 0.83 -0.0
2,726,589 + PS417_12530 0.83 -0.5
2,726,589 + PS417_12530 0.83 -0.5
2,726,589 + PS417_12530 0.83 -0.1
2,726,590 - PS417_12530 0.83 -0.3
2,726,590 - PS417_12530 0.83 +0.2
2,726,590 - PS417_12530 0.83 -0.7
2,726,805 + -0.7

Or see this region's nucleotide sequence