Strain Fitness in Pseudomonas simiae WCS417 around PS417_10840

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10835 and PS417_10840 are separated by 19 nucleotidesPS417_10840 and PS417_10845 overlap by 12 nucleotidesPS417_10845 and PS417_10850 are separated by 219 nucleotides PS417_10835: PS417_10835 - major facilitator transporter, at 2,316,452 to 2,317,768 _10835 PS417_10840: PS417_10840 - amidase, at 2,317,788 to 2,318,561 _10840 PS417_10845: PS417_10845 - hypothetical protein, at 2,318,550 to 2,318,858 _10845 PS417_10850: PS417_10850 - histidine kinase, at 2,319,078 to 2,320,139 _10850 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -1 0 1at 2316.851 kb on + strand, within PS417_10835at 2316.851 kb on + strand, within PS417_10835at 2316.852 kb on - strand, within PS417_10835at 2316.854 kb on + strand, within PS417_10835at 2316.854 kb on + strand, within PS417_10835at 2316.869 kb on + strand, within PS417_10835at 2317.055 kb on + strand, within PS417_10835at 2317.055 kb on + strand, within PS417_10835at 2317.056 kb on - strand, within PS417_10835at 2317.165 kb on + strand, within PS417_10835at 2317.188 kb on + strand, within PS417_10835at 2317.188 kb on + strand, within PS417_10835at 2317.189 kb on - strand, within PS417_10835at 2317.189 kb on - strand, within PS417_10835at 2317.190 kb on + strand, within PS417_10835at 2317.191 kb on - strand, within PS417_10835at 2317.232 kb on + strand, within PS417_10835at 2317.320 kb on - strand, within PS417_10835at 2317.339 kb on + strand, within PS417_10835at 2317.343 kb on + strand, within PS417_10835at 2317.343 kb on + strand, within PS417_10835at 2317.343 kb on + strand, within PS417_10835at 2317.343 kb on + strand, within PS417_10835at 2317.518 kb on + strand, within PS417_10835at 2317.583 kb on - strand, within PS417_10835at 2317.583 kb on - strand, within PS417_10835at 2317.752 kb on - strandat 2317.752 kb on - strandat 2317.795 kb on + strandat 2317.796 kb on - strandat 2317.797 kb on + strandat 2317.797 kb on + strandat 2317.798 kb on - strandat 2317.981 kb on + strand, within PS417_10840at 2317.981 kb on + strand, within PS417_10840at 2318.209 kb on + strand, within PS417_10840at 2318.494 kb on + strandat 2318.989 kb on + strandat 2318.990 kb on - strandat 2318.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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2,316,851 + PS417_10835 0.30 +0.1
2,316,851 + PS417_10835 0.30 -0.3
2,316,852 - PS417_10835 0.30 -0.9
2,316,854 + PS417_10835 0.31 -0.5
2,316,854 + PS417_10835 0.31 -0.1
2,316,869 + PS417_10835 0.32 -0.3
2,317,055 + PS417_10835 0.46 -0.7
2,317,055 + PS417_10835 0.46 -0.4
2,317,056 - PS417_10835 0.46 -0.9
2,317,165 + PS417_10835 0.54 -0.2
2,317,188 + PS417_10835 0.56 -0.2
2,317,188 + PS417_10835 0.56 -0.2
2,317,189 - PS417_10835 0.56 +0.2
2,317,189 - PS417_10835 0.56 +0.5
2,317,190 + PS417_10835 0.56 -0.5
2,317,191 - PS417_10835 0.56 +0.2
2,317,232 + PS417_10835 0.59 -0.4
2,317,320 - PS417_10835 0.66 +0.2
2,317,339 + PS417_10835 0.67 -0.7
2,317,343 + PS417_10835 0.68 -0.1
2,317,343 + PS417_10835 0.68 +0.0
2,317,343 + PS417_10835 0.68 +0.1
2,317,343 + PS417_10835 0.68 +0.2
2,317,518 + PS417_10835 0.81 +1.7
2,317,583 - PS417_10835 0.86 +0.2
2,317,583 - PS417_10835 0.86 +0.2
2,317,752 - +0.5
2,317,752 - +0.8
2,317,795 + -0.1
2,317,796 - -0.9
2,317,797 + +1.0
2,317,797 + -0.1
2,317,798 - +0.2
2,317,981 + PS417_10840 0.25 -0.2
2,317,981 + PS417_10840 0.25 -0.7
2,318,209 + PS417_10840 0.54 -1.1
2,318,494 + +1.2
2,318,989 + -0.4
2,318,990 - +0.4
2,318,990 - -0.0

Or see this region's nucleotide sequence