Strain Fitness in Pseudomonas simiae WCS417 around PS417_09605

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09600 and PS417_09605 overlap by 10 nucleotidesPS417_09605 and PS417_09610 are separated by 8 nucleotides PS417_09600: PS417_09600 - glycosyl transferase family 1, at 2,079,108 to 2,080,211 _09600 PS417_09605: PS417_09605 - glycosyl transferase, at 2,080,202 to 2,081,419 _09605 PS417_09610: PS417_09610 - beta-xylosidase, at 2,081,428 to 2,082,756 _09610 Position (kb) 2080 2081 2082Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2079.376 kb on + strand, within PS417_09600at 2079.377 kb on - strand, within PS417_09600at 2079.809 kb on - strandat 2079.809 kb on - strand, within PS417_09600at 2079.940 kb on + strand, within PS417_09600at 2079.940 kb on + strand, within PS417_09600at 2079.941 kb on - strand, within PS417_09600at 2080.145 kb on - strandat 2080.203 kb on + strandat 2080.248 kb on + strandat 2080.248 kb on + strandat 2080.401 kb on + strand, within PS417_09605at 2080.974 kb on + strand, within PS417_09605at 2080.975 kb on - strand, within PS417_09605at 2081.523 kb on - strandat 2081.753 kb on + strand, within PS417_09610at 2081.910 kb on + strand, within PS417_09610at 2081.912 kb on + strand, within PS417_09610at 2081.912 kb on + strand, within PS417_09610at 2081.913 kb on - strandat 2081.913 kb on - strand, within PS417_09610at 2081.913 kb on - strand, within PS417_09610at 2082.394 kb on - strand, within PS417_09610at 2082.413 kb on - strand, within PS417_09610at 2082.416 kb on + strand, within PS417_09610

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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2,079,376 + PS417_09600 0.24 -3.2
2,079,377 - PS417_09600 0.24 -0.7
2,079,809 - +0.7
2,079,809 - PS417_09600 0.63 -0.6
2,079,940 + PS417_09600 0.75 -2.8
2,079,940 + PS417_09600 0.75 -2.2
2,079,941 - PS417_09600 0.75 -4.0
2,080,145 - -2.5
2,080,203 + -3.4
2,080,248 + +1.7
2,080,248 + -1.4
2,080,401 + PS417_09605 0.16 -0.2
2,080,974 + PS417_09605 0.63 -0.5
2,080,975 - PS417_09605 0.63 -1.0
2,081,523 - -0.5
2,081,753 + PS417_09610 0.24 -0.7
2,081,910 + PS417_09610 0.36 -0.6
2,081,912 + PS417_09610 0.36 +0.1
2,081,912 + PS417_09610 0.36 -0.8
2,081,913 - +0.8
2,081,913 - PS417_09610 0.36 -0.2
2,081,913 - PS417_09610 0.36 +1.8
2,082,394 - PS417_09610 0.73 -0.8
2,082,413 - PS417_09610 0.74 +0.3
2,082,416 + PS417_09610 0.74 +1.3

Or see this region's nucleotide sequence