Strain Fitness in Pseudomonas simiae WCS417 around PS417_09210

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09200 and PS417_09205 overlap by 4 nucleotidesPS417_09205 and PS417_09210 are separated by 135 nucleotidesPS417_09210 and PS417_09215 are separated by 91 nucleotides PS417_09200: PS417_09200 - ABC transporter, at 1,999,454 to 2,000,386 _09200 PS417_09205: PS417_09205 - membrane protein, at 2,000,383 to 2,001,162 _09205 PS417_09210: PS417_09210 - TetR family transcriptional regulator, at 2,001,298 to 2,001,837 _09210 PS417_09215: PS417_09215 - MFS transporter, at 2,001,929 to 2,003,122 _09215 Position (kb) 2001 2002Strain fitness (log2 ratio) -1 0 1at 2000.452 kb on - strandat 2000.563 kb on + strand, within PS417_09205at 2000.563 kb on + strand, within PS417_09205at 2000.572 kb on + strand, within PS417_09205at 2000.572 kb on + strand, within PS417_09205at 2000.572 kb on + strand, within PS417_09205at 2000.572 kb on + strand, within PS417_09205at 2000.573 kb on - strand, within PS417_09205at 2000.617 kb on + strand, within PS417_09205at 2000.700 kb on + strand, within PS417_09205at 2000.898 kb on + strand, within PS417_09205at 2000.957 kb on - strand, within PS417_09205at 2000.957 kb on - strand, within PS417_09205at 2001.112 kb on + strandat 2001.112 kb on + strandat 2001.112 kb on + strandat 2001.113 kb on - strandat 2001.113 kb on - strandat 2001.131 kb on + strandat 2001.235 kb on + strandat 2001.236 kb on - strandat 2001.328 kb on - strandat 2001.328 kb on - strandat 2001.365 kb on - strand, within PS417_09210at 2001.369 kb on + strand, within PS417_09210at 2001.681 kb on - strand, within PS417_09210at 2001.802 kb on - strandat 2001.829 kb on + strandat 2001.928 kb on + strandat 2002.022 kb on + strandat 2002.022 kb on + strandat 2002.023 kb on - strandat 2002.086 kb on - strand, within PS417_09215at 2002.086 kb on - strand, within PS417_09215at 2002.201 kb on + strand, within PS417_09215at 2002.201 kb on + strand, within PS417_09215at 2002.419 kb on - strand, within PS417_09215at 2002.462 kb on - strand, within PS417_09215at 2002.462 kb on - strand, within PS417_09215at 2002.530 kb on + strand, within PS417_09215at 2002.605 kb on - strand, within PS417_09215

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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2,000,452 - +1.5
2,000,563 + PS417_09205 0.23 -0.2
2,000,563 + PS417_09205 0.23 -0.3
2,000,572 + PS417_09205 0.24 -0.7
2,000,572 + PS417_09205 0.24 -0.4
2,000,572 + PS417_09205 0.24 +0.3
2,000,572 + PS417_09205 0.24 -0.5
2,000,573 - PS417_09205 0.24 -0.1
2,000,617 + PS417_09205 0.30 -0.1
2,000,700 + PS417_09205 0.41 -0.2
2,000,898 + PS417_09205 0.66 -0.2
2,000,957 - PS417_09205 0.74 +0.1
2,000,957 - PS417_09205 0.74 -0.0
2,001,112 + -0.8
2,001,112 + +0.9
2,001,112 + +0.1
2,001,113 - +0.4
2,001,113 - +0.0
2,001,131 + -0.2
2,001,235 + -0.0
2,001,236 - -0.3
2,001,328 - +0.9
2,001,328 - +0.5
2,001,365 - PS417_09210 0.12 -0.7
2,001,369 + PS417_09210 0.13 -1.5
2,001,681 - PS417_09210 0.71 -0.1
2,001,802 - +0.0
2,001,829 + -0.2
2,001,928 + -0.4
2,002,022 + +0.9
2,002,022 + -1.1
2,002,023 - -0.4
2,002,086 - PS417_09215 0.13 -0.3
2,002,086 - PS417_09215 0.13 -0.2
2,002,201 + PS417_09215 0.23 -0.6
2,002,201 + PS417_09215 0.23 -0.1
2,002,419 - PS417_09215 0.41 -0.2
2,002,462 - PS417_09215 0.45 -0.2
2,002,462 - PS417_09215 0.45 -0.3
2,002,530 + PS417_09215 0.50 +1.6
2,002,605 - PS417_09215 0.57 -0.1

Or see this region's nucleotide sequence