Experiment: 80% Methanol 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09200 and PS417_09205 overlap by 4 nucleotides PS417_09205 and PS417_09210 are separated by 135 nucleotides PS417_09210 and PS417_09215 are separated by 91 nucleotides
PS417_09200: PS417_09200 - ABC transporter, at 1,999,454 to 2,000,386
_09200
PS417_09205: PS417_09205 - membrane protein, at 2,000,383 to 2,001,162
_09205
PS417_09210: PS417_09210 - TetR family transcriptional regulator, at 2,001,298 to 2,001,837
_09210
PS417_09215: PS417_09215 - MFS transporter, at 2,001,929 to 2,003,122
_09215
Position (kb)
2001
2002 Strain fitness (log2 ratio)
-1
0
1 at 2000.452 kb on - strand at 2000.563 kb on + strand, within PS417_09205 at 2000.563 kb on + strand, within PS417_09205 at 2000.572 kb on + strand, within PS417_09205 at 2000.572 kb on + strand, within PS417_09205 at 2000.572 kb on + strand, within PS417_09205 at 2000.572 kb on + strand, within PS417_09205 at 2000.573 kb on - strand, within PS417_09205 at 2000.617 kb on + strand, within PS417_09205 at 2000.700 kb on + strand, within PS417_09205 at 2000.898 kb on + strand, within PS417_09205 at 2000.957 kb on - strand, within PS417_09205 at 2000.957 kb on - strand, within PS417_09205 at 2001.112 kb on + strand at 2001.112 kb on + strand at 2001.112 kb on + strand at 2001.113 kb on - strand at 2001.113 kb on - strand at 2001.131 kb on + strand at 2001.235 kb on + strand at 2001.236 kb on - strand at 2001.328 kb on - strand at 2001.328 kb on - strand at 2001.365 kb on - strand, within PS417_09210 at 2001.369 kb on + strand, within PS417_09210 at 2001.681 kb on - strand, within PS417_09210 at 2001.802 kb on - strand at 2001.829 kb on + strand at 2001.928 kb on + strand at 2002.022 kb on + strand at 2002.022 kb on + strand at 2002.023 kb on - strand at 2002.086 kb on - strand, within PS417_09215 at 2002.086 kb on - strand, within PS417_09215 at 2002.201 kb on + strand, within PS417_09215 at 2002.201 kb on + strand, within PS417_09215 at 2002.419 kb on - strand, within PS417_09215 at 2002.462 kb on - strand, within PS417_09215 at 2002.462 kb on - strand, within PS417_09215 at 2002.530 kb on + strand, within PS417_09215 at 2002.605 kb on - strand, within PS417_09215
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress remove 2,000,452 - +1.5 2,000,563 + PS417_09205 0.23 -0.2 2,000,563 + PS417_09205 0.23 -0.3 2,000,572 + PS417_09205 0.24 -0.7 2,000,572 + PS417_09205 0.24 -0.4 2,000,572 + PS417_09205 0.24 +0.3 2,000,572 + PS417_09205 0.24 -0.5 2,000,573 - PS417_09205 0.24 -0.1 2,000,617 + PS417_09205 0.30 -0.1 2,000,700 + PS417_09205 0.41 -0.2 2,000,898 + PS417_09205 0.66 -0.2 2,000,957 - PS417_09205 0.74 +0.1 2,000,957 - PS417_09205 0.74 -0.0 2,001,112 + -0.8 2,001,112 + +0.9 2,001,112 + +0.1 2,001,113 - +0.4 2,001,113 - +0.0 2,001,131 + -0.2 2,001,235 + -0.0 2,001,236 - -0.3 2,001,328 - +0.9 2,001,328 - +0.5 2,001,365 - PS417_09210 0.12 -0.7 2,001,369 + PS417_09210 0.13 -1.5 2,001,681 - PS417_09210 0.71 -0.1 2,001,802 - +0.0 2,001,829 + -0.2 2,001,928 + -0.4 2,002,022 + +0.9 2,002,022 + -1.1 2,002,023 - -0.4 2,002,086 - PS417_09215 0.13 -0.3 2,002,086 - PS417_09215 0.13 -0.2 2,002,201 + PS417_09215 0.23 -0.6 2,002,201 + PS417_09215 0.23 -0.1 2,002,419 - PS417_09215 0.41 -0.2 2,002,462 - PS417_09215 0.45 -0.2 2,002,462 - PS417_09215 0.45 -0.3 2,002,530 + PS417_09215 0.50 +1.6 2,002,605 - PS417_09215 0.57 -0.1
Or see this region's nucleotide sequence