Strain Fitness in Pseudomonas simiae WCS417 around PS417_08685

Experiment: 80% Methanol 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08675 and PS417_08680 are separated by 128 nucleotidesPS417_08680 and PS417_08685 overlap by 4 nucleotidesPS417_08685 and PS417_08690 are separated by 200 nucleotidesPS417_08690 and PS417_08695 overlap by 4 nucleotides PS417_08675: PS417_08675 - molybdenum cofactor biosynthesis protein MoaA, at 1,891,861 to 1,893,087 _08675 PS417_08680: PS417_08680 - flagellar biosynthesis protein FlhB, at 1,893,216 to 1,893,545 _08680 PS417_08685: PS417_08685 - flagellar hook-length control protein FliK, at 1,893,542 to 1,895,119 _08685 PS417_08690: PS417_08690 - cytochrome C biogenesis protein CcmA, at 1,895,320 to 1,895,955 _08690 PS417_08695: PS417_08695 - heme transporter, at 1,895,952 to 1,896,620 _08695 Position (kb) 1893 1894 1895 1896Strain fitness (log2 ratio) -2 -1 0 1at 1892.821 kb on + strand, within PS417_08675at 1892.821 kb on + strand, within PS417_08675at 1892.822 kb on - strand, within PS417_08675at 1892.822 kb on - strand, within PS417_08675at 1893.069 kb on - strandat 1893.069 kb on - strandat 1893.337 kb on + strand, within PS417_08680at 1893.407 kb on - strandat 1893.503 kb on - strand, within PS417_08680at 1894.898 kb on + strand, within PS417_08685at 1894.899 kb on - strand, within PS417_08685at 1895.095 kb on + strandat 1895.158 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.173 kb on - strandat 1895.173 kb on - strandat 1895.217 kb on + strandat 1895.217 kb on + strandat 1895.218 kb on - strandat 1895.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; solid stress
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1,892,821 + PS417_08675 0.78 +0.5
1,892,821 + PS417_08675 0.78 -0.6
1,892,822 - PS417_08675 0.78 -0.7
1,892,822 - PS417_08675 0.78 -1.9
1,893,069 - +0.3
1,893,069 - -0.1
1,893,337 + PS417_08680 0.37 -0.5
1,893,407 - -0.3
1,893,503 - PS417_08680 0.87 -0.1
1,894,898 + PS417_08685 0.86 +0.4
1,894,899 - PS417_08685 0.86 -1.2
1,895,095 + +0.1
1,895,158 + +0.2
1,895,172 + +0.2
1,895,172 + +0.1
1,895,172 + -0.7
1,895,172 + -0.2
1,895,172 + -0.4
1,895,172 + -0.0
1,895,172 + -0.3
1,895,172 + -0.6
1,895,172 + -1.3
1,895,172 + -0.3
1,895,173 - -0.1
1,895,173 - +0.7
1,895,217 + -0.3
1,895,217 + +0.5
1,895,218 - +1.2
1,895,256 + -0.8

Or see this region's nucleotide sequence