Strain Fitness in Pseudomonas simiae WCS417 around PS417_24320

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24315 and PS417_24320 are separated by 287 nucleotidesPS417_24320 and PS417_24325 are separated by 45 nucleotides PS417_24315: PS417_24315 - catalase, at 5,277,395 to 5,278,936 _24315 PS417_24320: PS417_24320 - large-conductance mechanosensitive channel, at 5,279,224 to 5,279,643 _24320 PS417_24325: PS417_24325 - ferredoxin-NADP reductase, at 5,279,689 to 5,280,465 _24325 Position (kb) 5279 5280Strain fitness (log2 ratio) -2 -1 0 1at 5278.512 kb on + strand, within PS417_24315at 5278.698 kb on - strand, within PS417_24315at 5279.012 kb on - strandat 5279.012 kb on - strandat 5279.015 kb on + strandat 5279.042 kb on - strandat 5279.108 kb on - strandat 5279.118 kb on + strandat 5279.145 kb on - strandat 5279.181 kb on + strandat 5279.182 kb on - strandat 5279.209 kb on - strandat 5279.224 kb on - strandat 5279.265 kb on + strandat 5279.265 kb on + strandat 5279.266 kb on - strand, within PS417_24320at 5279.266 kb on - strand, within PS417_24320at 5279.287 kb on + strand, within PS417_24320at 5279.293 kb on - strand, within PS417_24320at 5279.333 kb on + strand, within PS417_24320at 5279.334 kb on - strand, within PS417_24320at 5279.401 kb on - strand, within PS417_24320at 5279.696 kb on + strandat 5280.480 kb on + strandat 5280.523 kb on + strandat 5280.523 kb on + strandat 5280.523 kb on + strandat 5280.524 kb on - strandat 5280.524 kb on - strandat 5280.524 kb on - strandat 5280.563 kb on + strandat 5280.567 kb on + strandat 5280.568 kb on - strandat 5280.568 kb on - strandat 5280.570 kb on + strandat 5280.627 kb on - strandat 5280.637 kb on + strandat 5280.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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5,278,512 + PS417_24315 0.72 +0.3
5,278,698 - PS417_24315 0.85 -0.4
5,279,012 - +0.8
5,279,012 - -0.1
5,279,015 + -0.3
5,279,042 - -0.2
5,279,108 - -0.3
5,279,118 + -0.5
5,279,145 - -0.2
5,279,181 + -0.9
5,279,182 - -0.5
5,279,209 - +0.3
5,279,224 - -0.1
5,279,265 + +0.8
5,279,265 + +0.4
5,279,266 - PS417_24320 0.10 -0.6
5,279,266 - PS417_24320 0.10 +0.5
5,279,287 + PS417_24320 0.15 -0.5
5,279,293 - PS417_24320 0.16 -0.7
5,279,333 + PS417_24320 0.26 -0.2
5,279,334 - PS417_24320 0.26 -2.2
5,279,401 - PS417_24320 0.42 -0.8
5,279,696 + -1.1
5,280,480 + -0.5
5,280,523 + -0.1
5,280,523 + -2.1
5,280,523 + +0.6
5,280,524 - -0.7
5,280,524 - +0.1
5,280,524 - +0.1
5,280,563 + -0.1
5,280,567 + -1.2
5,280,568 - -1.2
5,280,568 - -0.4
5,280,570 + -0.8
5,280,627 - -0.1
5,280,637 + -0.3
5,280,638 - -0.1

Or see this region's nucleotide sequence