Strain Fitness in Pseudomonas simiae WCS417 around PS417_22215

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22210 and PS417_22215 are separated by 160 nucleotidesPS417_22215 and PS417_22220 are separated by 352 nucleotidesPS417_22220 and PS417_22225 are separated by 105 nucleotides PS417_22210: PS417_22210 - AraC family transcriptional regulator, at 4,815,033 to 4,816,091 _22210 PS417_22215: PS417_22215 - membrane protein, at 4,816,252 to 4,816,563 _22215 PS417_22220: PS417_22220 - hypothetical protein, at 4,816,916 to 4,817,098 _22220 PS417_22225: PS417_22225 - MFS transporter, at 4,817,204 to 4,818,400 _22225 Position (kb) 4816 4817Strain fitness (log2 ratio) -1 0 1 2at 4815.425 kb on - strand, within PS417_22210at 4815.425 kb on - strand, within PS417_22210at 4815.521 kb on - strand, within PS417_22210at 4815.709 kb on - strand, within PS417_22210at 4815.728 kb on - strand, within PS417_22210at 4816.103 kb on - strandat 4816.105 kb on + strandat 4816.141 kb on + strandat 4816.144 kb on + strandat 4816.144 kb on + strandat 4816.156 kb on + strandat 4816.156 kb on + strandat 4816.156 kb on + strandat 4816.156 kb on + strandat 4816.157 kb on - strandat 4816.157 kb on - strandat 4816.157 kb on - strandat 4816.157 kb on - strandat 4816.173 kb on - strandat 4816.198 kb on - strandat 4816.291 kb on + strand, within PS417_22215at 4816.301 kb on - strand, within PS417_22215at 4816.301 kb on - strand, within PS417_22215at 4816.434 kb on + strand, within PS417_22215at 4816.435 kb on - strand, within PS417_22215at 4816.501 kb on + strand, within PS417_22215at 4816.529 kb on - strand, within PS417_22215at 4816.637 kb on + strandat 4816.637 kb on + strandat 4816.638 kb on - strandat 4816.722 kb on - strandat 4816.722 kb on - strandat 4816.725 kb on + strandat 4816.726 kb on - strandat 4816.726 kb on - strandat 4816.726 kb on - strandat 4816.726 kb on - strandat 4816.752 kb on + strandat 4817.170 kb on + strandat 4817.256 kb on + strandat 4817.256 kb on + strandat 4817.257 kb on - strandat 4817.316 kb on - strandat 4817.316 kb on - strandat 4817.316 kb on - strandat 4817.375 kb on + strand, within PS417_22225at 4817.376 kb on - strand, within PS417_22225

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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4,815,425 - PS417_22210 0.37 -0.9
4,815,425 - PS417_22210 0.37 -0.0
4,815,521 - PS417_22210 0.46 +1.9
4,815,709 - PS417_22210 0.64 +0.8
4,815,728 - PS417_22210 0.66 +0.3
4,816,103 - -0.8
4,816,105 + +0.2
4,816,141 + +0.2
4,816,144 + -0.2
4,816,144 + +0.2
4,816,156 + +0.2
4,816,156 + +0.3
4,816,156 + -0.8
4,816,156 + +0.5
4,816,157 - +2.0
4,816,157 - +0.7
4,816,157 - +0.1
4,816,157 - +0.4
4,816,173 - +0.0
4,816,198 - +2.2
4,816,291 + PS417_22215 0.12 -0.5
4,816,301 - PS417_22215 0.16 -1.4
4,816,301 - PS417_22215 0.16 -0.2
4,816,434 + PS417_22215 0.58 -0.3
4,816,435 - PS417_22215 0.59 -0.6
4,816,501 + PS417_22215 0.80 -0.3
4,816,529 - PS417_22215 0.89 -0.2
4,816,637 + +0.7
4,816,637 + +1.3
4,816,638 - +0.7
4,816,722 - -0.2
4,816,722 - -0.3
4,816,725 + +0.2
4,816,726 - -0.0
4,816,726 - +0.5
4,816,726 - +1.5
4,816,726 - +0.7
4,816,752 + +0.4
4,817,170 + +2.0
4,817,256 + -0.3
4,817,256 + -0.1
4,817,257 - -1.4
4,817,316 - +0.2
4,817,316 - +1.2
4,817,316 - -0.6
4,817,375 + PS417_22225 0.14 -0.1
4,817,376 - PS417_22225 0.14 +0.8

Or see this region's nucleotide sequence