Experiment: Fraxetin 1 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19965 and PS417_19970 are separated by 46 nucleotides PS417_19970 and PS417_19975 are separated by 61 nucleotides PS417_19975 and PS417_19980 are separated by 457 nucleotides
PS417_19965: PS417_19965 - histidine kinase, at 4,334,517 to 4,337,987
_19965
PS417_19970: PS417_19970 - recombinase RmuC, at 4,338,034 to 4,339,512
_19970
PS417_19975: PS417_19975 - hypothetical protein, at 4,339,574 to 4,339,897
_19975
PS417_19980: PS417_19980 - hypothetical protein, at 4,340,355 to 4,340,660
_19980
Position (kb)
4338
4339
4340 Strain fitness (log2 ratio)
-2
-1
0
1 at 4337.172 kb on - strand, within PS417_19965 at 4337.172 kb on - strand, within PS417_19965 at 4337.320 kb on + strand, within PS417_19965 at 4337.781 kb on + strand at 4337.922 kb on + strand at 4337.923 kb on - strand at 4338.194 kb on + strand, within PS417_19970 at 4338.195 kb on - strand, within PS417_19970 at 4338.195 kb on - strand, within PS417_19970 at 4338.266 kb on + strand, within PS417_19970 at 4338.346 kb on + strand, within PS417_19970 at 4338.346 kb on + strand, within PS417_19970 at 4338.347 kb on - strand, within PS417_19970 at 4338.506 kb on + strand, within PS417_19970 at 4338.507 kb on - strand, within PS417_19970 at 4338.603 kb on - strand, within PS417_19970 at 4338.603 kb on - strand, within PS417_19970 at 4338.603 kb on - strand, within PS417_19970 at 4338.793 kb on - strand, within PS417_19970 at 4338.868 kb on + strand, within PS417_19970 at 4338.869 kb on - strand, within PS417_19970 at 4339.512 kb on + strand at 4339.770 kb on - strand, within PS417_19975 at 4339.954 kb on + strand at 4339.955 kb on - strand at 4339.985 kb on - strand at 4340.045 kb on + strand at 4340.232 kb on - strand at 4340.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress remove 4,337,172 - PS417_19965 0.76 +0.8 4,337,172 - PS417_19965 0.76 -0.3 4,337,320 + PS417_19965 0.81 -0.3 4,337,781 + -0.1 4,337,922 + -0.0 4,337,923 - +0.3 4,338,194 + PS417_19970 0.11 -0.4 4,338,195 - PS417_19970 0.11 -0.3 4,338,195 - PS417_19970 0.11 -1.3 4,338,266 + PS417_19970 0.16 -1.0 4,338,346 + PS417_19970 0.21 -0.2 4,338,346 + PS417_19970 0.21 -0.6 4,338,347 - PS417_19970 0.21 -0.6 4,338,506 + PS417_19970 0.32 -0.2 4,338,507 - PS417_19970 0.32 -1.0 4,338,603 - PS417_19970 0.38 -1.9 4,338,603 - PS417_19970 0.38 -0.4 4,338,603 - PS417_19970 0.38 -1.0 4,338,793 - PS417_19970 0.51 -2.0 4,338,868 + PS417_19970 0.56 +0.5 4,338,869 - PS417_19970 0.56 +0.1 4,339,512 + -0.2 4,339,770 - PS417_19975 0.60 -0.0 4,339,954 + +0.2 4,339,955 - +0.2 4,339,985 - +0.1 4,340,045 + -0.5 4,340,232 - -0.4 4,340,232 - -1.7
Or see this region's nucleotide sequence