Strain Fitness in Pseudomonas simiae WCS417 around PS417_10530

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10520 and PS417_10525 are separated by 34 nucleotidesPS417_10525 and PS417_10530 are separated by 133 nucleotidesPS417_10530 and PS417_10535 are separated by 59 nucleotidesPS417_10535 and PS417_10540 are separated by 546 nucleotides PS417_10520: PS417_10520 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,036 to 2,245,695 _10520 PS417_10525: PS417_10525 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,730 to 2,246,428 _10525 PS417_10530: PS417_10530 - LysR family transcriptional regulator, at 2,246,562 to 2,247,467 _10530 PS417_10535: PS417_10535 - hypothetical protein, at 2,247,527 to 2,247,856 _10535 PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248 _10540 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2245.708 kb on + strandat 2245.731 kb on + strandat 2245.732 kb on - strandat 2245.794 kb on + strandat 2246.489 kb on - strandat 2246.571 kb on - strandat 2246.897 kb on - strand, within PS417_10530at 2246.897 kb on - strand, within PS417_10530at 2246.897 kb on - strand, within PS417_10530at 2247.042 kb on + strand, within PS417_10530at 2247.367 kb on + strand, within PS417_10530at 2247.367 kb on + strand, within PS417_10530at 2247.367 kb on + strand, within PS417_10530at 2247.368 kb on - strand, within PS417_10530at 2247.368 kb on - strand, within PS417_10530at 2247.419 kb on + strandat 2247.463 kb on + strandat 2247.463 kb on + strandat 2247.464 kb on - strandat 2247.465 kb on + strandat 2247.465 kb on + strandat 2247.465 kb on + strandat 2247.466 kb on - strandat 2247.496 kb on - strandat 2247.534 kb on + strandat 2247.534 kb on + strandat 2247.535 kb on - strandat 2247.539 kb on - strandat 2247.587 kb on - strand, within PS417_10535at 2247.590 kb on - strand, within PS417_10535at 2247.648 kb on + strand, within PS417_10535at 2247.649 kb on - strand, within PS417_10535at 2247.667 kb on - strand, within PS417_10535at 2247.860 kb on + strandat 2247.886 kb on - strandat 2247.911 kb on + strandat 2247.911 kb on + strandat 2247.911 kb on + strandat 2247.911 kb on + strandat 2247.912 kb on - strandat 2247.912 kb on - strandat 2247.912 kb on - strandat 2247.912 kb on - strandat 2247.989 kb on - strandat 2248.159 kb on - strandat 2248.210 kb on + strandat 2248.210 kb on + strandat 2248.246 kb on + strandat 2248.247 kb on - strandat 2248.251 kb on - strandat 2248.251 kb on - strandat 2248.251 kb on - strandat 2248.377 kb on + strandat 2248.378 kb on - strandat 2248.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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2,245,708 + +1.6
2,245,731 + -0.5
2,245,732 - -0.0
2,245,794 + -0.4
2,246,489 - +0.0
2,246,571 - -0.1
2,246,897 - PS417_10530 0.37 +0.2
2,246,897 - PS417_10530 0.37 -0.4
2,246,897 - PS417_10530 0.37 +0.6
2,247,042 + PS417_10530 0.53 -0.7
2,247,367 + PS417_10530 0.89 -1.0
2,247,367 + PS417_10530 0.89 -0.5
2,247,367 + PS417_10530 0.89 -0.5
2,247,368 - PS417_10530 0.89 -0.2
2,247,368 - PS417_10530 0.89 -1.1
2,247,419 + +1.3
2,247,463 + -0.4
2,247,463 + -0.7
2,247,464 - -0.2
2,247,465 + -0.6
2,247,465 + -0.3
2,247,465 + -0.2
2,247,466 - -0.2
2,247,496 - +0.2
2,247,534 + -0.7
2,247,534 + -0.6
2,247,535 - -0.6
2,247,539 - -0.4
2,247,587 - PS417_10535 0.18 +0.0
2,247,590 - PS417_10535 0.19 -0.0
2,247,648 + PS417_10535 0.37 -0.1
2,247,649 - PS417_10535 0.37 -0.5
2,247,667 - PS417_10535 0.42 +0.2
2,247,860 + -0.1
2,247,886 - -0.0
2,247,911 + -0.3
2,247,911 + +0.5
2,247,911 + -0.1
2,247,911 + +0.7
2,247,912 - -0.5
2,247,912 - +0.3
2,247,912 - -3.1
2,247,912 - -0.3
2,247,989 - +1.6
2,248,159 - -0.8
2,248,210 + -0.7
2,248,210 + -0.6
2,248,246 + -0.3
2,248,247 - +0.0
2,248,251 - -0.6
2,248,251 - -0.5
2,248,251 - +1.8
2,248,377 + +0.2
2,248,378 - +0.4
2,248,398 - -2.6

Or see this region's nucleotide sequence