Strain Fitness in Pseudomonas simiae WCS417 around PS417_09570

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09565 and PS417_09570 are separated by 70 nucleotidesPS417_09570 and PS417_09575 are separated by 12 nucleotidesPS417_09575 and PS417_09580 are separated by 164 nucleotides PS417_09565: PS417_09565 - DNA polymerase II, at 2,070,719 to 2,073,076 _09565 PS417_09570: PS417_09570 - GCN5 family acetyltransferase, at 2,073,147 to 2,073,725 _09570 PS417_09575: PS417_09575 - glutathione S-transferase, at 2,073,738 to 2,074,370 _09575 PS417_09580: PS417_09580 - tyrosyl-trna synthetase, at 2,074,535 to 2,075,110 _09580 Position (kb) 2073 2074Strain fitness (log2 ratio) -2 -1 0 1 2at 2072.216 kb on + strand, within PS417_09565at 2072.216 kb on + strand, within PS417_09565at 2072.333 kb on + strand, within PS417_09565at 2072.615 kb on + strand, within PS417_09565at 2072.717 kb on + strand, within PS417_09565at 2072.718 kb on - strand, within PS417_09565at 2072.718 kb on - strand, within PS417_09565at 2072.730 kb on - strandat 2072.730 kb on - strand, within PS417_09565at 2072.858 kb on + strandat 2072.859 kb on - strandat 2072.859 kb on - strandat 2072.978 kb on + strandat 2072.979 kb on - strandat 2072.979 kb on - strandat 2072.979 kb on - strandat 2073.291 kb on - strand, within PS417_09570at 2073.294 kb on + strand, within PS417_09570at 2073.294 kb on + strandat 2073.381 kb on - strand, within PS417_09570at 2073.434 kb on + strand, within PS417_09570at 2073.501 kb on + strand, within PS417_09570at 2073.502 kb on - strand, within PS417_09570at 2073.723 kb on + strandat 2073.724 kb on - strandat 2073.724 kb on - strandat 2073.741 kb on + strandat 2073.741 kb on + strandat 2073.741 kb on + strandat 2073.742 kb on - strandat 2073.966 kb on + strand, within PS417_09575at 2074.024 kb on - strand, within PS417_09575at 2074.024 kb on - strand, within PS417_09575at 2074.334 kb on - strandat 2074.519 kb on + strandat 2074.603 kb on + strand, within PS417_09580

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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2,072,216 + PS417_09565 0.63 -0.3
2,072,216 + PS417_09565 0.63 -0.1
2,072,333 + PS417_09565 0.68 +0.2
2,072,615 + PS417_09565 0.80 -0.1
2,072,717 + PS417_09565 0.85 +0.9
2,072,718 - PS417_09565 0.85 +0.0
2,072,718 - PS417_09565 0.85 +0.3
2,072,730 - +1.0
2,072,730 - PS417_09565 0.85 -0.3
2,072,858 + -0.3
2,072,859 - -0.3
2,072,859 - -1.1
2,072,978 + -0.2
2,072,979 - -0.4
2,072,979 - +0.1
2,072,979 - +0.3
2,073,291 - PS417_09570 0.25 -0.4
2,073,294 + PS417_09570 0.25 -1.0
2,073,294 + -0.0
2,073,381 - PS417_09570 0.40 -1.3
2,073,434 + PS417_09570 0.50 -0.0
2,073,501 + PS417_09570 0.61 -0.6
2,073,502 - PS417_09570 0.61 -0.3
2,073,723 + -0.3
2,073,724 - +0.1
2,073,724 - +1.8
2,073,741 + -1.3
2,073,741 + -0.5
2,073,741 + -0.5
2,073,742 - -0.5
2,073,966 + PS417_09575 0.36 -0.7
2,074,024 - PS417_09575 0.45 -0.5
2,074,024 - PS417_09575 0.45 -2.4
2,074,334 - +0.4
2,074,519 + -0.7
2,074,603 + PS417_09580 0.12 -0.6

Or see this region's nucleotide sequence