Strain Fitness in Pseudomonas simiae WCS417 around PS417_06040

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06030 and PS417_06035 are separated by 168 nucleotidesPS417_06035 and PS417_06040 are separated by 186 nucleotidesPS417_06040 and PS417_06045 are separated by 29 nucleotidesPS417_06045 and PS417_06050 are separated by 55 nucleotides PS417_06030: PS417_06030 - hypothetical protein, at 1,340,307 to 1,340,633 _06030 PS417_06035: PS417_06035 - hypothetical protein, at 1,340,802 to 1,341,146 _06035 PS417_06040: PS417_06040 - hypothetical protein, at 1,341,333 to 1,341,527 _06040 PS417_06045: PS417_06045 - membrane protein, at 1,341,557 to 1,342,342 _06045 PS417_06050: PS417_06050 - chromosome partitioning protein ParA, at 1,342,398 to 1,342,823 _06050 Position (kb) 1341 1342Strain fitness (log2 ratio) -1 0 1 2at 1340.389 kb on - strand, within PS417_06030at 1340.389 kb on - strand, within PS417_06030at 1340.394 kb on + strand, within PS417_06030at 1340.473 kb on - strand, within PS417_06030at 1340.473 kb on - strand, within PS417_06030at 1340.687 kb on + strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.802 kb on - strandat 1340.810 kb on + strandat 1340.915 kb on + strand, within PS417_06035at 1340.927 kb on + strand, within PS417_06035at 1341.201 kb on - strandat 1341.201 kb on - strandat 1341.288 kb on + strandat 1341.289 kb on - strandat 1341.289 kb on - strandat 1341.300 kb on - strandat 1341.314 kb on + strandat 1341.314 kb on + strandat 1341.318 kb on + strandat 1341.318 kb on + strandat 1341.319 kb on - strandat 1341.340 kb on + strandat 1341.388 kb on + strand, within PS417_06040at 1341.388 kb on + strand, within PS417_06040at 1341.389 kb on - strand, within PS417_06040at 1341.417 kb on + strand, within PS417_06040at 1341.526 kb on - strandat 1341.707 kb on - strand, within PS417_06045at 1341.775 kb on - strand, within PS417_06045at 1342.105 kb on - strand, within PS417_06045at 1342.336 kb on + strandat 1342.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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1,340,389 - PS417_06030 0.25 -0.3
1,340,389 - PS417_06030 0.25 +0.5
1,340,394 + PS417_06030 0.27 -0.9
1,340,473 - PS417_06030 0.51 -0.0
1,340,473 - PS417_06030 0.51 +0.1
1,340,687 + +0.3
1,340,800 - -0.2
1,340,800 - +0.8
1,340,800 - -0.4
1,340,800 - -0.4
1,340,800 - +0.8
1,340,802 - -0.1
1,340,810 + -1.2
1,340,915 + PS417_06035 0.33 +1.1
1,340,927 + PS417_06035 0.36 +0.4
1,341,201 - -0.8
1,341,201 - -0.9
1,341,288 + -0.3
1,341,289 - +0.1
1,341,289 - +0.7
1,341,300 - -1.2
1,341,314 + +0.2
1,341,314 + +0.4
1,341,318 + -0.3
1,341,318 + -1.3
1,341,319 - -0.1
1,341,340 + -0.3
1,341,388 + PS417_06040 0.28 -0.9
1,341,388 + PS417_06040 0.28 -0.3
1,341,389 - PS417_06040 0.29 -0.2
1,341,417 + PS417_06040 0.43 -0.8
1,341,526 - +0.0
1,341,707 - PS417_06045 0.19 -0.1
1,341,775 - PS417_06045 0.28 +1.8
1,342,105 - PS417_06045 0.70 -0.3
1,342,336 + -0.6
1,342,399 + -0.9

Or see this region's nucleotide sequence