Experiment: Scopoletin 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21935 and PS417_21940 are separated by 11 nucleotides PS417_21940 and PS417_21945 are separated by 204 nucleotides PS417_21945 and PS417_21950 overlap by 4 nucleotides PS417_21950 and PS417_21955 are separated by 34 nucleotides PS417_21955 and PS417_21960 are separated by 42 nucleotides
PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271
_21935
PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528
_21940
PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956
_21945
PS417_21950: PS417_21950 - polyketide cyclase, at 4,761,953 to 4,762,429
_21950
PS417_21955: PS417_21955 - dehydrogenase, at 4,762,464 to 4,762,808
_21955
PS417_21960: PS417_21960 - ketosteroid isomerase, at 4,762,851 to 4,763,270
_21960
Position (kb) 4760
4761
4762 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4759.959 kb on - strand, within PS417_21935 at 4760.117 kb on + strand, within PS417_21935 at 4760.323 kb on + strand at 4760.394 kb on - strand, within PS417_21940 at 4760.592 kb on + strand at 4760.722 kb on + strand at 4760.821 kb on + strand at 4760.894 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945 at 4761.409 kb on + strand, within PS417_21945 at 4761.409 kb on + strand, within PS417_21945 at 4761.409 kb on + strand, within PS417_21945 at 4761.424 kb on - strand, within PS417_21945 at 4761.588 kb on + strand, within PS417_21945 at 4761.589 kb on - strand, within PS417_21945 at 4761.589 kb on - strand, within PS417_21945 at 4762.080 kb on + strand, within PS417_21950 at 4762.424 kb on - strand at 4762.451 kb on - strand at 4762.451 kb on - strand at 4762.451 kb on - strand at 4762.573 kb on + strand, within PS417_21955 at 4762.573 kb on + strand, within PS417_21955 at 4762.723 kb on + strand, within PS417_21955 at 4762.801 kb on + strand at 4762.801 kb on + strand at 4762.838 kb on + strand at 4762.838 kb on + strand at 4762.839 kb on - strand at 4762.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; liquid stress remove 4,759,959 - PS417_21935 0.63 -0.5 4,760,117 + PS417_21935 0.82 +0.4 4,760,323 + +1.9 4,760,394 - PS417_21940 0.45 -0.6 4,760,592 + -0.6 4,760,722 + +0.2 4,760,821 + -0.7 4,760,894 - PS417_21945 0.13 +1.2 4,761,022 - PS417_21945 0.24 +0.4 4,761,022 - PS417_21945 0.24 +0.1 4,761,022 - PS417_21945 0.24 -0.4 4,761,028 + PS417_21945 0.24 -0.2 4,761,028 + PS417_21945 0.24 -0.2 4,761,409 + PS417_21945 0.55 -1.3 4,761,409 + PS417_21945 0.55 +0.2 4,761,409 + PS417_21945 0.55 -0.0 4,761,424 - PS417_21945 0.56 +5.3 4,761,588 + PS417_21945 0.70 +0.2 4,761,589 - PS417_21945 0.70 -0.4 4,761,589 - PS417_21945 0.70 -0.3 4,762,080 + PS417_21950 0.27 +0.1 4,762,424 - +0.4 4,762,451 - -0.1 4,762,451 - -0.8 4,762,451 - -0.2 4,762,573 + PS417_21955 0.32 -0.3 4,762,573 + PS417_21955 0.32 +0.0 4,762,723 + PS417_21955 0.75 -0.2 4,762,801 + +0.5 4,762,801 + +0.1 4,762,838 + -1.8 4,762,838 + +0.8 4,762,839 - +0.8 4,762,839 - -1.7
Or see this region's nucleotide sequence