Strain Fitness in Pseudomonas simiae WCS417 around PS417_12785

Experiment: Scopoletin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12780 and PS417_12785 are separated by 184 nucleotidesPS417_12785 and PS417_12790 are separated by 120 nucleotidesPS417_12790 and PS417_12795 are separated by 358 nucleotides PS417_12780: PS417_12780 - (Fe-S)-binding protein, at 2,791,935 to 2,793,344 _12780 PS417_12785: PS417_12785 - hypothetical protein, at 2,793,529 to 2,793,768 _12785 PS417_12790: PS417_12790 - methyltransferase, at 2,793,889 to 2,794,380 _12790 PS417_12795: PS417_12795 - alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 2,794,739 to 2,796,721 _12795 Position (kb) 2793 2794Strain fitness (log2 ratio) -1 0 1 2at 2792.650 kb on - strand, within PS417_12780at 2792.650 kb on - strand, within PS417_12780at 2792.719 kb on + strand, within PS417_12780at 2792.719 kb on + strand, within PS417_12780at 2792.720 kb on - strand, within PS417_12780at 2792.720 kb on - strand, within PS417_12780at 2793.231 kb on - strandat 2793.258 kb on - strandat 2793.382 kb on + strandat 2793.383 kb on - strandat 2793.383 kb on - strandat 2793.624 kb on - strand, within PS417_12785at 2793.624 kb on - strand, within PS417_12785at 2793.624 kb on - strandat 2793.624 kb on - strand, within PS417_12785at 2793.681 kb on + strand, within PS417_12785at 2793.737 kb on + strand, within PS417_12785at 2793.737 kb on + strand, within PS417_12785at 2793.737 kb on + strand, within PS417_12785at 2793.738 kb on - strand, within PS417_12785at 2793.738 kb on - strand, within PS417_12785at 2793.738 kb on - strand, within PS417_12785at 2794.314 kb on + strand, within PS417_12790at 2794.652 kb on - strandat 2794.654 kb on + strandat 2794.722 kb on + strandat 2794.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 1 mM; liquid stress
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2,792,650 - PS417_12780 0.51 -1.0
2,792,650 - PS417_12780 0.51 +0.9
2,792,719 + PS417_12780 0.56 -0.2
2,792,719 + PS417_12780 0.56 -0.1
2,792,720 - PS417_12780 0.56 -0.2
2,792,720 - PS417_12780 0.56 +0.6
2,793,231 - +0.4
2,793,258 - -0.1
2,793,382 + +2.2
2,793,383 - -0.8
2,793,383 - -0.0
2,793,624 - PS417_12785 0.40 -0.2
2,793,624 - PS417_12785 0.40 +0.1
2,793,624 - -0.4
2,793,624 - PS417_12785 0.40 -0.4
2,793,681 + PS417_12785 0.63 -0.1
2,793,737 + PS417_12785 0.87 +0.8
2,793,737 + PS417_12785 0.87 +0.0
2,793,737 + PS417_12785 0.87 -0.5
2,793,738 - PS417_12785 0.87 -0.4
2,793,738 - PS417_12785 0.87 +0.5
2,793,738 - PS417_12785 0.87 +0.5
2,794,314 + PS417_12790 0.86 -0.4
2,794,652 - -0.2
2,794,654 + -1.4
2,794,722 + +0.4
2,794,752 + +0.5

Or see this region's nucleotide sequence