Strain Fitness in Pseudomonas simiae WCS417 around PS417_11425

Experiment: Scopoletin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11420 and PS417_11425 are separated by 364 nucleotidesPS417_11425 and PS417_11430 are separated by 186 nucleotides PS417_11420: PS417_11420 - potassium transporter KefB, at 2,457,052 to 2,458,860 _11420 PS417_11425: PS417_11425 - transcriptional regulator, at 2,459,225 to 2,459,530 _11425 PS417_11430: PS417_11430 - EamA, at 2,459,717 to 2,460,619 _11430 Position (kb) 2459 2460Strain fitness (log2 ratio) -1 0 1at 2458.754 kb on + strandat 2458.838 kb on - strandat 2458.903 kb on + strandat 2458.969 kb on + strandat 2459.009 kb on + strandat 2459.009 kb on + strandat 2459.010 kb on - strandat 2459.123 kb on + strandat 2459.123 kb on + strandat 2459.124 kb on - strandat 2459.124 kb on - strandat 2459.426 kb on + strand, within PS417_11425at 2459.427 kb on - strand, within PS417_11425at 2459.447 kb on + strand, within PS417_11425at 2459.447 kb on + strand, within PS417_11425at 2459.447 kb on + strand, within PS417_11425at 2459.447 kb on + strand, within PS417_11425at 2459.447 kb on + strand, within PS417_11425at 2459.447 kb on + strandat 2459.719 kb on - strandat 2459.722 kb on + strandat 2459.722 kb on + strandat 2459.973 kb on + strand, within PS417_11430at 2460.180 kb on - strand, within PS417_11430at 2460.387 kb on + strand, within PS417_11430at 2460.388 kb on - strand, within PS417_11430at 2460.388 kb on - strand, within PS417_11430at 2460.421 kb on + strand, within PS417_11430at 2460.441 kb on + strand, within PS417_11430at 2460.441 kb on + strand, within PS417_11430at 2460.519 kb on - strand, within PS417_11430

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 1 mM; liquid stress
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2,458,754 + +0.8
2,458,838 - -0.3
2,458,903 + +0.6
2,458,969 + +1.0
2,459,009 + +0.1
2,459,009 + +1.0
2,459,010 - +0.6
2,459,123 + -0.6
2,459,123 + -0.1
2,459,124 - +0.4
2,459,124 - +1.0
2,459,426 + PS417_11425 0.66 -0.3
2,459,427 - PS417_11425 0.66 -1.2
2,459,447 + PS417_11425 0.73 -0.2
2,459,447 + PS417_11425 0.73 -1.1
2,459,447 + PS417_11425 0.73 -0.5
2,459,447 + PS417_11425 0.73 -1.1
2,459,447 + PS417_11425 0.73 -0.3
2,459,447 + +1.4
2,459,719 - -0.5
2,459,722 + -0.1
2,459,722 + +1.6
2,459,973 + PS417_11430 0.28 -0.6
2,460,180 - PS417_11430 0.51 -0.6
2,460,387 + PS417_11430 0.74 -0.3
2,460,388 - PS417_11430 0.74 +0.6
2,460,388 - PS417_11430 0.74 -0.2
2,460,421 + PS417_11430 0.78 +0.2
2,460,441 + PS417_11430 0.80 -0.8
2,460,441 + PS417_11430 0.80 -0.2
2,460,519 - PS417_11430 0.89 +0.4

Or see this region's nucleotide sequence