Strain Fitness in Pseudomonas simiae WCS417 around PS417_24560

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24550 and PS417_24555 are separated by 250 nucleotidesPS417_24555 and PS417_24560 are separated by 15 nucleotidesPS417_24560 and PS417_24565 overlap by 4 nucleotides PS417_24550: PS417_24550 - ATP-dependent helicase, at 5,326,064 to 5,328,574 _24550 PS417_24555: PS417_24555 - polyribonucleotide nucleotidyltransferase, at 5,328,825 to 5,329,244 _24555 PS417_24560: PS417_24560 - ferrous iron transporter, at 5,329,260 to 5,330,153 _24560 PS417_24565: PS417_24565 - hypothetical protein, at 5,330,150 to 5,331,196 _24565 Position (kb) 5329 5330 5331Strain fitness (log2 ratio) -2 -1 0 1 2at 5328.602 kb on + strandat 5328.719 kb on + strandat 5328.761 kb on + strandat 5328.782 kb on + strandat 5328.782 kb on + strandat 5328.783 kb on - strandat 5328.790 kb on + strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.792 kb on + strandat 5328.792 kb on + strandat 5328.792 kb on + strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.793 kb on - strandat 5328.825 kb on - strandat 5328.984 kb on + strand, within PS417_24555at 5328.984 kb on + strand, within PS417_24555at 5328.985 kb on - strand, within PS417_24555at 5328.985 kb on - strand, within PS417_24555at 5329.035 kb on - strand, within PS417_24555at 5329.038 kb on + strand, within PS417_24555at 5329.039 kb on - strand, within PS417_24555at 5329.260 kb on - strandat 5329.532 kb on + strand, within PS417_24560at 5329.651 kb on + strand, within PS417_24560at 5329.657 kb on + strand, within PS417_24560at 5329.726 kb on - strand, within PS417_24560at 5329.831 kb on - strand, within PS417_24560at 5329.831 kb on - strand, within PS417_24560at 5329.831 kb on - strand, within PS417_24560at 5330.105 kb on - strandat 5330.151 kb on + strandat 5330.152 kb on - strandat 5330.154 kb on + strandat 5330.155 kb on - strandat 5330.235 kb on + strandat 5330.306 kb on + strand, within PS417_24565at 5330.352 kb on + strandat 5330.415 kb on + strand, within PS417_24565at 5330.415 kb on + strand, within PS417_24565at 5330.415 kb on + strand, within PS417_24565at 5330.416 kb on - strand, within PS417_24565at 5330.416 kb on - strand, within PS417_24565at 5330.416 kb on - strand, within PS417_24565at 5330.416 kb on - strand, within PS417_24565at 5330.436 kb on + strand, within PS417_24565at 5330.436 kb on + strand, within PS417_24565at 5330.436 kb on + strand, within PS417_24565at 5330.442 kb on + strand, within PS417_24565at 5330.442 kb on + strand, within PS417_24565at 5330.442 kb on - strand, within PS417_24565at 5330.443 kb on - strand, within PS417_24565at 5330.445 kb on + strand, within PS417_24565at 5330.446 kb on - strand, within PS417_24565at 5330.511 kb on + strand, within PS417_24565at 5330.511 kb on + strand, within PS417_24565at 5330.550 kb on + strand, within PS417_24565at 5330.551 kb on - strand, within PS417_24565at 5330.551 kb on - strand, within PS417_24565at 5330.551 kb on - strand, within PS417_24565at 5330.595 kb on + strand, within PS417_24565at 5330.596 kb on - strand, within PS417_24565at 5330.596 kb on - strand, within PS417_24565at 5330.799 kb on + strand, within PS417_24565at 5330.800 kb on - strand, within PS417_24565at 5330.902 kb on + strand, within PS417_24565at 5330.903 kb on - strand, within PS417_24565

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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5,328,602 + -0.1
5,328,719 + -0.9
5,328,761 + -1.9
5,328,782 + +0.2
5,328,782 + -0.7
5,328,783 - -0.7
5,328,790 + -0.4
5,328,791 - +0.5
5,328,791 - +1.2
5,328,791 - -1.9
5,328,791 - -0.6
5,328,792 + -0.7
5,328,792 + +0.1
5,328,792 + +0.5
5,328,793 - -0.2
5,328,793 - +2.2
5,328,793 - +0.9
5,328,793 - +0.3
5,328,793 - +1.2
5,328,793 - +0.4
5,328,793 - +0.1
5,328,793 - -0.0
5,328,793 - +0.4
5,328,825 - -0.2
5,328,984 + PS417_24555 0.38 +0.2
5,328,984 + PS417_24555 0.38 +1.2
5,328,985 - PS417_24555 0.38 -0.9
5,328,985 - PS417_24555 0.38 -1.0
5,329,035 - PS417_24555 0.50 -0.4
5,329,038 + PS417_24555 0.51 +0.1
5,329,039 - PS417_24555 0.51 +0.4
5,329,260 - -0.6
5,329,532 + PS417_24560 0.30 -0.6
5,329,651 + PS417_24560 0.44 -0.2
5,329,657 + PS417_24560 0.44 -1.1
5,329,726 - PS417_24560 0.52 -0.2
5,329,831 - PS417_24560 0.64 -1.4
5,329,831 - PS417_24560 0.64 +0.9
5,329,831 - PS417_24560 0.64 +0.7
5,330,105 - +0.9
5,330,151 + +0.5
5,330,152 - -0.5
5,330,154 + +2.5
5,330,155 - +1.5
5,330,235 + -0.6
5,330,306 + PS417_24565 0.15 -0.4
5,330,352 + +1.2
5,330,415 + PS417_24565 0.25 +0.5
5,330,415 + PS417_24565 0.25 -0.0
5,330,415 + PS417_24565 0.25 -0.3
5,330,416 - PS417_24565 0.25 +0.5
5,330,416 - PS417_24565 0.25 -0.1
5,330,416 - PS417_24565 0.25 -0.3
5,330,416 - PS417_24565 0.25 +2.0
5,330,436 + PS417_24565 0.27 -0.1
5,330,436 + PS417_24565 0.27 -0.5
5,330,436 + PS417_24565 0.27 -0.6
5,330,442 + PS417_24565 0.28 -1.0
5,330,442 + PS417_24565 0.28 -0.3
5,330,442 - PS417_24565 0.28 +0.0
5,330,443 - PS417_24565 0.28 +1.9
5,330,445 + PS417_24565 0.28 -0.2
5,330,446 - PS417_24565 0.28 -0.0
5,330,511 + PS417_24565 0.34 +0.2
5,330,511 + PS417_24565 0.34 -0.2
5,330,550 + PS417_24565 0.38 +0.2
5,330,551 - PS417_24565 0.38 -1.8
5,330,551 - PS417_24565 0.38 -0.0
5,330,551 - PS417_24565 0.38 +0.3
5,330,595 + PS417_24565 0.43 -0.1
5,330,596 - PS417_24565 0.43 +0.3
5,330,596 - PS417_24565 0.43 -0.3
5,330,799 + PS417_24565 0.62 +0.3
5,330,800 - PS417_24565 0.62 -0.6
5,330,902 + PS417_24565 0.72 +0.1
5,330,903 - PS417_24565 0.72 +0.5

Or see this region's nucleotide sequence