Strain Fitness in Pseudomonas simiae WCS417 around PS417_17140

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17135 and PS417_17140 overlap by 31 nucleotidesPS417_17140 and PS417_17145 are separated by 113 nucleotides PS417_17135: PS417_17135 - LysR family transcriptional regulator, at 3,742,078 to 3,742,974 _17135 PS417_17140: PS417_17140 - LysR family transcriptional regulator, at 3,742,944 to 3,743,804 _17140 PS417_17145: PS417_17145 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 3,743,918 to 3,745,027 _17145 Position (kb) 3742 3743 3744Strain fitness (log2 ratio) -2 -1 0 1at 3741.971 kb on - strandat 3741.982 kb on + strandat 3741.982 kb on + strandat 3742.001 kb on - strandat 3742.483 kb on + strand, within PS417_17135at 3742.489 kb on + strand, within PS417_17135at 3742.568 kb on + strand, within PS417_17135at 3742.568 kb on + strand, within PS417_17135at 3742.569 kb on - strand, within PS417_17135at 3742.614 kb on + strand, within PS417_17135at 3742.614 kb on + strand, within PS417_17135at 3742.615 kb on - strand, within PS417_17135at 3743.204 kb on + strand, within PS417_17140at 3743.204 kb on + strand, within PS417_17140at 3743.205 kb on - strand, within PS417_17140at 3743.677 kb on + strand, within PS417_17140at 3743.677 kb on + strand, within PS417_17140at 3743.678 kb on - strand, within PS417_17140at 3743.750 kb on + strandat 3743.824 kb on - strandat 3743.833 kb on - strandat 3743.874 kb on + strandat 3744.608 kb on + strand, within PS417_17145at 3744.608 kb on + strand, within PS417_17145at 3744.608 kb on + strand, within PS417_17145at 3744.609 kb on - strand, within PS417_17145at 3744.609 kb on - strand, within PS417_17145at 3744.654 kb on + strand, within PS417_17145at 3744.654 kb on + strand, within PS417_17145at 3744.655 kb on - strand, within PS417_17145at 3744.719 kb on - strand, within PS417_17145at 3744.726 kb on - strand, within PS417_17145

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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3,741,971 - +0.0
3,741,982 + -1.1
3,741,982 + -1.1
3,742,001 - +0.4
3,742,483 + PS417_17135 0.45 -1.0
3,742,489 + PS417_17135 0.46 -0.2
3,742,568 + PS417_17135 0.55 -0.2
3,742,568 + PS417_17135 0.55 +0.3
3,742,569 - PS417_17135 0.55 +0.4
3,742,614 + PS417_17135 0.60 +0.2
3,742,614 + PS417_17135 0.60 -0.4
3,742,615 - PS417_17135 0.60 +0.6
3,743,204 + PS417_17140 0.30 -1.4
3,743,204 + PS417_17140 0.30 +0.0
3,743,205 - PS417_17140 0.30 -0.6
3,743,677 + PS417_17140 0.85 -0.7
3,743,677 + PS417_17140 0.85 +0.1
3,743,678 - PS417_17140 0.85 -0.9
3,743,750 + -0.2
3,743,824 - -0.2
3,743,833 - +0.3
3,743,874 + +1.5
3,744,608 + PS417_17145 0.62 +0.2
3,744,608 + PS417_17145 0.62 -0.0
3,744,608 + PS417_17145 0.62 -1.9
3,744,609 - PS417_17145 0.62 -1.1
3,744,609 - PS417_17145 0.62 +1.3
3,744,654 + PS417_17145 0.66 +0.4
3,744,654 + PS417_17145 0.66 +0.6
3,744,655 - PS417_17145 0.66 -0.7
3,744,719 - PS417_17145 0.72 +1.1
3,744,726 - PS417_17145 0.73 +0.0

Or see this region's nucleotide sequence