Experiment: 80% Methanol 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17135 and PS417_17140 overlap by 31 nucleotides PS417_17140 and PS417_17145 are separated by 113 nucleotides
PS417_17135: PS417_17135 - LysR family transcriptional regulator, at 3,742,078 to 3,742,974
_17135
PS417_17140: PS417_17140 - LysR family transcriptional regulator, at 3,742,944 to 3,743,804
_17140
PS417_17145: PS417_17145 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 3,743,918 to 3,745,027
_17145
Position (kb)
3742
3743
3744 Strain fitness (log2 ratio)
-2
-1
0
1 at 3741.971 kb on - strand at 3741.982 kb on + strand at 3741.982 kb on + strand at 3742.001 kb on - strand at 3742.483 kb on + strand, within PS417_17135 at 3742.489 kb on + strand, within PS417_17135 at 3742.568 kb on + strand, within PS417_17135 at 3742.568 kb on + strand, within PS417_17135 at 3742.569 kb on - strand, within PS417_17135 at 3742.614 kb on + strand, within PS417_17135 at 3742.614 kb on + strand, within PS417_17135 at 3742.615 kb on - strand, within PS417_17135 at 3743.204 kb on + strand, within PS417_17140 at 3743.204 kb on + strand, within PS417_17140 at 3743.205 kb on - strand, within PS417_17140 at 3743.677 kb on + strand, within PS417_17140 at 3743.677 kb on + strand, within PS417_17140 at 3743.678 kb on - strand, within PS417_17140 at 3743.750 kb on + strand at 3743.824 kb on - strand at 3743.833 kb on - strand at 3743.874 kb on + strand at 3744.608 kb on + strand, within PS417_17145 at 3744.608 kb on + strand, within PS417_17145 at 3744.608 kb on + strand, within PS417_17145 at 3744.609 kb on - strand, within PS417_17145 at 3744.609 kb on - strand, within PS417_17145 at 3744.654 kb on + strand, within PS417_17145 at 3744.654 kb on + strand, within PS417_17145 at 3744.655 kb on - strand, within PS417_17145 at 3744.719 kb on - strand, within PS417_17145 at 3744.726 kb on - strand, within PS417_17145
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress remove 3,741,971 - +0.0 3,741,982 + -1.1 3,741,982 + -1.1 3,742,001 - +0.4 3,742,483 + PS417_17135 0.45 -1.0 3,742,489 + PS417_17135 0.46 -0.2 3,742,568 + PS417_17135 0.55 -0.2 3,742,568 + PS417_17135 0.55 +0.3 3,742,569 - PS417_17135 0.55 +0.4 3,742,614 + PS417_17135 0.60 +0.2 3,742,614 + PS417_17135 0.60 -0.4 3,742,615 - PS417_17135 0.60 +0.6 3,743,204 + PS417_17140 0.30 -1.4 3,743,204 + PS417_17140 0.30 +0.0 3,743,205 - PS417_17140 0.30 -0.6 3,743,677 + PS417_17140 0.85 -0.7 3,743,677 + PS417_17140 0.85 +0.1 3,743,678 - PS417_17140 0.85 -0.9 3,743,750 + -0.2 3,743,824 - -0.2 3,743,833 - +0.3 3,743,874 + +1.5 3,744,608 + PS417_17145 0.62 +0.2 3,744,608 + PS417_17145 0.62 -0.0 3,744,608 + PS417_17145 0.62 -1.9 3,744,609 - PS417_17145 0.62 -1.1 3,744,609 - PS417_17145 0.62 +1.3 3,744,654 + PS417_17145 0.66 +0.4 3,744,654 + PS417_17145 0.66 +0.6 3,744,655 - PS417_17145 0.66 -0.7 3,744,719 - PS417_17145 0.72 +1.1 3,744,726 - PS417_17145 0.73 +0.0
Or see this region's nucleotide sequence