Strain Fitness in Pseudomonas simiae WCS417 around PS417_11725

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11720 and PS417_11725 are separated by 18 nucleotidesPS417_11725 and PS417_11730 are separated by 142 nucleotides PS417_11720: PS417_11720 - class V aminotransferase, at 2,547,982 to 2,549,253 _11720 PS417_11725: PS417_11725 - peptidase M19, at 2,549,272 to 2,550,621 _11725 PS417_11730: PS417_11730 - PvdJ/PvdD/PvdP-like protein, at 2,550,764 to 2,552,398 _11730 Position (kb) 2549 2550 2551Strain fitness (log2 ratio) -2 -1 0 1at 2548.557 kb on - strand, within PS417_11720at 2548.814 kb on + strand, within PS417_11720at 2548.815 kb on - strand, within PS417_11720at 2549.215 kb on + strandat 2549.216 kb on - strandat 2549.216 kb on - strandat 2550.033 kb on - strand, within PS417_11725at 2550.033 kb on - strand, within PS417_11725at 2550.033 kb on - strand, within PS417_11725at 2550.176 kb on + strand, within PS417_11725at 2550.210 kb on - strand, within PS417_11725at 2550.231 kb on - strand, within PS417_11725at 2550.591 kb on - strandat 2550.740 kb on + strandat 2550.753 kb on + strandat 2550.833 kb on + strandat 2551.253 kb on - strand, within PS417_11730at 2551.290 kb on + strand, within PS417_11730at 2551.290 kb on + strand, within PS417_11730

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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2,548,557 - PS417_11720 0.45 -0.8
2,548,814 + PS417_11720 0.65 +0.3
2,548,815 - PS417_11720 0.65 -1.9
2,549,215 + -0.7
2,549,216 - -0.4
2,549,216 - -1.1
2,550,033 - PS417_11725 0.56 -0.6
2,550,033 - PS417_11725 0.56 -0.3
2,550,033 - PS417_11725 0.56 -0.1
2,550,176 + PS417_11725 0.67 -0.6
2,550,210 - PS417_11725 0.69 -0.9
2,550,231 - PS417_11725 0.71 -1.6
2,550,591 - -0.2
2,550,740 + +0.8
2,550,753 + +0.2
2,550,833 + +0.0
2,551,253 - PS417_11730 0.30 -0.4
2,551,290 + PS417_11730 0.32 -1.4
2,551,290 + PS417_11730 0.32 -0.2

Or see this region's nucleotide sequence