Strain Fitness in Pseudomonas simiae WCS417 around PS417_18910

Experiment: 80% Methanol 2 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_18905 and PS417_18910 are separated by 165 nucleotidesPS417_18910 and PS417_18915 overlap by 4 nucleotidesPS417_18915 and PS417_18920 are separated by 9 nucleotides PS417_18905: PS417_18905 - acyl-CoA dehydrogenase, at 4,094,498 to 4,095,739 _18905 PS417_18910: PS417_18910 - acetylornithine deacetylase, at 4,095,905 to 4,097,062 _18910 PS417_18915: PS417_18915 - hypothetical protein, at 4,097,059 to 4,097,733 _18915 PS417_18920: PS417_18920 - hypothetical protein, at 4,097,743 to 4,098,474 _18920 Position (kb) 4095 4096 4097 4098Strain fitness (log2 ratio) -1 0 1at 4094.996 kb on + strand, within PS417_18905at 4095.172 kb on - strand, within PS417_18905at 4095.441 kb on + strand, within PS417_18905at 4095.441 kb on + strandat 4095.441 kb on + strandat 4095.656 kb on + strandat 4095.735 kb on + strandat 4095.735 kb on + strandat 4095.735 kb on + strandat 4095.736 kb on - strandat 4095.736 kb on - strandat 4095.874 kb on + strandat 4095.874 kb on + strandat 4095.899 kb on + strandat 4095.899 kb on + strandat 4095.901 kb on + strandat 4095.902 kb on - strandat 4095.902 kb on - strandat 4095.902 kb on - strandat 4095.906 kb on + strandat 4095.906 kb on + strandat 4095.982 kb on + strandat 4096.494 kb on + strand, within PS417_18910at 4096.494 kb on + strand, within PS417_18910at 4096.671 kb on + strand, within PS417_18910at 4096.750 kb on - strand, within PS417_18910at 4096.750 kb on - strand, within PS417_18910at 4096.779 kb on + strand, within PS417_18910at 4096.936 kb on - strand, within PS417_18910at 4096.971 kb on + strandat 4096.972 kb on - strandat 4097.124 kb on - strandat 4097.385 kb on + strand, within PS417_18915at 4097.386 kb on - strand, within PS417_18915at 4097.821 kb on - strand, within PS417_18920at 4097.821 kb on - strand, within PS417_18920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
remove
4,094,996 + PS417_18905 0.40 -0.4
4,095,172 - PS417_18905 0.54 -0.2
4,095,441 + PS417_18905 0.76 -0.1
4,095,441 + +0.0
4,095,441 + -0.5
4,095,656 + -0.1
4,095,735 + +1.5
4,095,735 + +1.2
4,095,735 + -0.1
4,095,736 - +1.1
4,095,736 - +1.0
4,095,874 + +0.6
4,095,874 + +0.2
4,095,899 + +0.4
4,095,899 + -0.3
4,095,901 + +0.1
4,095,902 - +0.2
4,095,902 - +0.5
4,095,902 - +0.2
4,095,906 + +0.1
4,095,906 + -0.3
4,095,982 + +0.5
4,096,494 + PS417_18910 0.51 +0.1
4,096,494 + PS417_18910 0.51 +0.9
4,096,671 + PS417_18910 0.66 +1.0
4,096,750 - PS417_18910 0.73 +1.2
4,096,750 - PS417_18910 0.73 +0.4
4,096,779 + PS417_18910 0.75 -0.9
4,096,936 - PS417_18910 0.89 -0.2
4,096,971 + +0.8
4,096,972 - +0.8
4,097,124 - +0.3
4,097,385 + PS417_18915 0.48 -0.7
4,097,386 - PS417_18915 0.48 +0.2
4,097,821 - PS417_18920 0.11 +1.1
4,097,821 - PS417_18920 0.11 +0.0

Or see this region's nucleotide sequence