Experiment: 20 hr rep1_No_BD100_grewON
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfjH and alpA are separated by 43 nucleotides alpA and yfjI are separated by 128 nucleotides yfjI and yfjJ are separated by 152 nucleotides yfjJ and yfjK are separated by 177 nucleotides
b2623: yfjH - CP4-57 prophage; predicted protein (NCBI), at 2,755,666 to 2,756,622
yfjH
b2624: alpA - CP4-57 prophage; DNA-binding transcriptional activator (NCBI), at 2,756,666 to 2,756,878
alpA
b2625: yfjI - CP4-57 prophage; predicted protein (NCBI), at 2,757,007 to 2,758,416
yfjI
b2626: yfjJ - CP4-57 prophage; predicted protein (NCBI), at 2,758,569 to 2,759,195
yfjJ
b2627: yfjK - CP4-57 prophage; conserved protein (NCBI), at 2,759,373 to 2,761,562
yfjK
Position (kb)
2757
2758
2759 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2756.090 kb on - strand, within yfjH at 2756.123 kb on - strand, within yfjH at 2756.158 kb on - strand, within yfjH at 2756.165 kb on - strand, within yfjH at 2756.259 kb on - strand, within yfjH at 2756.306 kb on - strand, within yfjH at 2756.306 kb on - strand, within yfjH at 2756.308 kb on - strand, within yfjH at 2756.308 kb on - strand, within yfjH at 2756.317 kb on - strand, within yfjH at 2756.317 kb on - strand, within yfjH at 2756.317 kb on - strand, within yfjH at 2756.317 kb on - strand, within yfjH at 2756.318 kb on - strand, within yfjH at 2756.320 kb on - strand, within yfjH at 2756.325 kb on - strand, within yfjH at 2756.325 kb on - strand, within yfjH at 2756.334 kb on - strand, within yfjH at 2756.335 kb on - strand, within yfjH at 2756.389 kb on - strand, within yfjH at 2756.389 kb on - strand, within yfjH at 2756.389 kb on - strand, within yfjH at 2756.412 kb on - strand, within yfjH at 2756.412 kb on - strand, within yfjH at 2756.412 kb on - strand, within yfjH at 2756.412 kb on - strand, within yfjH at 2756.412 kb on - strand, within yfjH at 2756.412 kb on - strand, within yfjH at 2756.445 kb on - strand, within yfjH at 2756.445 kb on - strand, within yfjH at 2756.457 kb on - strand, within yfjH at 2756.493 kb on - strand, within yfjH at 2756.499 kb on - strand, within yfjH at 2756.569 kb on - strand at 2756.611 kb on + strand at 2756.698 kb on - strand, within alpA at 2756.698 kb on - strand, within alpA at 2756.703 kb on - strand, within alpA at 2756.737 kb on - strand, within alpA at 2756.737 kb on - strand, within alpA at 2756.739 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.741 kb on + strand, within alpA at 2756.746 kb on - strand, within alpA at 2756.749 kb on - strand, within alpA at 2756.751 kb on - strand, within alpA at 2756.758 kb on + strand, within alpA at 2756.758 kb on + strand, within alpA at 2756.768 kb on + strand, within alpA at 2756.768 kb on + strand, within alpA at 2756.808 kb on + strand, within alpA at 2756.827 kb on + strand, within alpA at 2756.827 kb on + strand, within alpA at 2756.827 kb on + strand, within alpA at 2756.838 kb on + strand, within alpA at 2756.838 kb on + strand, within alpA at 2756.838 kb on + strand, within alpA at 2756.838 kb on + strand, within alpA at 2756.838 kb on + strand, within alpA at 2756.848 kb on + strand, within alpA at 2756.848 kb on + strand, within alpA at 2756.850 kb on + strand, within alpA at 2756.850 kb on + strand, within alpA at 2756.850 kb on + strand, within alpA at 2756.862 kb on + strand at 2756.893 kb on + strand at 2756.906 kb on + strand at 2756.909 kb on + strand at 2756.916 kb on + strand at 2756.918 kb on + strand at 2756.918 kb on + strand at 2756.918 kb on + strand at 2756.920 kb on + strand at 2757.018 kb on - strand at 2757.084 kb on - strand at 2757.089 kb on - strand at 2757.089 kb on - strand at 2757.092 kb on - strand at 2757.093 kb on - strand at 2757.093 kb on - strand at 2757.107 kb on - strand at 2757.184 kb on - strand, within yfjI at 2757.521 kb on - strand, within yfjI at 2757.523 kb on - strand, within yfjI at 2757.575 kb on + strand, within yfjI at 2757.776 kb on + strand, within yfjI at 2757.780 kb on + strand, within yfjI at 2757.791 kb on + strand, within yfjI at 2757.791 kb on + strand, within yfjI at 2757.791 kb on + strand, within yfjI at 2757.838 kb on + strand, within yfjI at 2757.838 kb on + strand, within yfjI at 2758.060 kb on + strand, within yfjI at 2758.060 kb on + strand, within yfjI at 2758.599 kb on + strand at 2758.650 kb on - strand, within yfjJ at 2758.742 kb on + strand, within yfjJ at 2758.744 kb on - strand, within yfjJ at 2758.744 kb on - strand, within yfjJ at 2758.760 kb on + strand, within yfjJ at 2758.784 kb on + strand, within yfjJ at 2758.820 kb on + strand, within yfjJ at 2758.828 kb on + strand, within yfjJ at 2758.900 kb on - strand, within yfjJ at 2758.934 kb on - strand, within yfjJ at 2758.973 kb on - strand, within yfjJ at 2758.987 kb on - strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.989 kb on + strand, within yfjJ at 2758.994 kb on + strand, within yfjJ at 2758.996 kb on + strand, within yfjJ at 2758.996 kb on + strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.997 kb on - strand, within yfjJ at 2758.999 kb on + strand, within yfjJ at 2758.999 kb on - strand, within yfjJ at 2759.002 kb on - strand, within yfjJ at 2759.005 kb on - strand, within yfjJ at 2759.007 kb on - strand, within yfjJ at 2759.007 kb on - strand, within yfjJ at 2759.007 kb on - strand, within yfjJ at 2759.010 kb on - strand, within yfjJ at 2759.010 kb on - strand, within yfjJ at 2759.011 kb on + strand, within yfjJ at 2759.013 kb on + strand, within yfjJ at 2759.013 kb on + strand, within yfjJ at 2759.013 kb on + strand, within yfjJ at 2759.013 kb on + strand, within yfjJ at 2759.013 kb on + strand, within yfjJ at 2759.019 kb on - strand, within yfjJ at 2759.019 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.021 kb on - strand, within yfjJ at 2759.079 kb on - strand, within yfjJ at 2759.081 kb on + strand, within yfjJ at 2759.081 kb on + strand, within yfjJ at 2759.094 kb on - strand, within yfjJ at 2759.096 kb on + strand, within yfjJ at 2759.096 kb on + strand, within yfjJ at 2759.096 kb on + strand, within yfjJ at 2759.096 kb on + strand, within yfjJ at 2759.096 kb on + strand, within yfjJ at 2759.096 kb on + strand, within yfjJ at 2759.114 kb on + strand, within yfjJ at 2759.138 kb on + strand at 2759.138 kb on + strand at 2759.149 kb on + strand at 2759.176 kb on - strand at 2759.176 kb on - strand at 2759.228 kb on - strand at 2759.238 kb on - strand at 2759.243 kb on - strand at 2759.286 kb on - strand at 2759.286 kb on - strand at 2759.296 kb on - strand at 2759.296 kb on - strand at 2759.296 kb on - strand at 2759.296 kb on - strand at 2759.296 kb on - strand at 2759.299 kb on - strand at 2759.299 kb on - strand at 2759.299 kb on - strand at 2759.324 kb on - strand at 2759.324 kb on - strand at 2759.389 kb on - strand at 2759.408 kb on - strand at 2759.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 20 hr rep1_No_BD100_grewON remove 2,756,090 - yfjH b2623 0.44 +1.3 2,756,123 - yfjH b2623 0.48 -1.0 2,756,158 - yfjH b2623 0.51 -0.3 2,756,165 - yfjH b2623 0.52 -1.3 2,756,259 - yfjH b2623 0.62 +1.0 2,756,306 - yfjH b2623 0.67 +1.1 2,756,306 - yfjH b2623 0.67 +0.0 2,756,308 - yfjH b2623 0.67 -1.0 2,756,308 - yfjH b2623 0.67 -0.9 2,756,317 - yfjH b2623 0.68 -1.3 2,756,317 - yfjH b2623 0.68 +0.6 2,756,317 - yfjH b2623 0.68 +0.3 2,756,317 - yfjH b2623 0.68 +0.3 2,756,318 - yfjH b2623 0.68 -0.7 2,756,320 - yfjH b2623 0.68 +0.3 2,756,325 - yfjH b2623 0.69 +0.3 2,756,325 - yfjH b2623 0.69 -0.3 2,756,334 - yfjH b2623 0.70 +3.7 2,756,335 - yfjH b2623 0.70 +1.6 2,756,389 - yfjH b2623 0.76 +2.0 2,756,389 - yfjH b2623 0.76 +1.0 2,756,389 - yfjH b2623 0.76 -2.8 2,756,412 - yfjH b2623 0.78 -0.5 2,756,412 - yfjH b2623 0.78 -0.8 2,756,412 - yfjH b2623 0.78 -0.7 2,756,412 - yfjH b2623 0.78 +1.7 2,756,412 - yfjH b2623 0.78 -0.0 2,756,412 - yfjH b2623 0.78 +0.7 2,756,445 - yfjH b2623 0.81 +1.0 2,756,445 - yfjH b2623 0.81 -0.3 2,756,457 - yfjH b2623 0.83 -2.1 2,756,493 - yfjH b2623 0.86 +2.3 2,756,499 - yfjH b2623 0.87 +0.4 2,756,569 - -1.4 2,756,611 + +0.5 2,756,698 - alpA b2624 0.15 +0.1 2,756,698 - alpA b2624 0.15 +0.4 2,756,703 - alpA b2624 0.17 +0.4 2,756,737 - alpA b2624 0.33 +0.3 2,756,737 - alpA b2624 0.33 +1.3 2,756,739 + alpA b2624 0.34 +0.4 2,756,741 + alpA b2624 0.35 -1.2 2,756,741 + alpA b2624 0.35 +1.1 2,756,741 + alpA b2624 0.35 -2.0 2,756,741 + alpA b2624 0.35 -0.1 2,756,741 + alpA b2624 0.35 +0.6 2,756,741 + alpA b2624 0.35 +0.3 2,756,741 + alpA b2624 0.35 -0.2 2,756,741 + alpA b2624 0.35 +2.6 2,756,741 + alpA b2624 0.35 +0.1 2,756,741 + alpA b2624 0.35 +0.0 2,756,741 + alpA b2624 0.35 -0.3 2,756,741 + alpA b2624 0.35 +0.4 2,756,746 - alpA b2624 0.38 -2.0 2,756,749 - alpA b2624 0.39 +1.1 2,756,751 - alpA b2624 0.40 +1.1 2,756,758 + alpA b2624 0.43 -0.3 2,756,758 + alpA b2624 0.43 -0.1 2,756,768 + alpA b2624 0.48 +0.4 2,756,768 + alpA b2624 0.48 +3.3 2,756,808 + alpA b2624 0.67 +0.7 2,756,827 + alpA b2624 0.76 +0.9 2,756,827 + alpA b2624 0.76 +0.7 2,756,827 + alpA b2624 0.76 +1.4 2,756,838 + alpA b2624 0.81 +0.2 2,756,838 + alpA b2624 0.81 +1.0 2,756,838 + alpA b2624 0.81 +0.5 2,756,838 + alpA b2624 0.81 -0.5 2,756,838 + alpA b2624 0.81 -0.1 2,756,848 + alpA b2624 0.85 -1.1 2,756,848 + alpA b2624 0.85 +0.2 2,756,850 + alpA b2624 0.86 +0.3 2,756,850 + alpA b2624 0.86 -0.3 2,756,850 + alpA b2624 0.86 +0.2 2,756,862 + +0.8 2,756,893 + -1.5 2,756,906 + -1.1 2,756,909 + -0.5 2,756,916 + -0.8 2,756,918 + +3.2 2,756,918 + -0.7 2,756,918 + +1.5 2,756,920 + -0.4 2,757,018 - +1.3 2,757,084 - -1.3 2,757,089 - -1.2 2,757,089 - -0.7 2,757,092 - -2.1 2,757,093 - +0.3 2,757,093 - +1.3 2,757,107 - +1.3 2,757,184 - yfjI b2625 0.13 +1.3 2,757,521 - yfjI b2625 0.36 +1.3 2,757,523 - yfjI b2625 0.37 +1.3 2,757,575 + yfjI b2625 0.40 +1.3 2,757,776 + yfjI b2625 0.55 +1.3 2,757,780 + yfjI b2625 0.55 -2.3 2,757,791 + yfjI b2625 0.56 -0.9 2,757,791 + yfjI b2625 0.56 +1.3 2,757,791 + yfjI b2625 0.56 +1.3 2,757,838 + yfjI b2625 0.59 +1.3 2,757,838 + yfjI b2625 0.59 +1.3 2,758,060 + yfjI b2625 0.75 +1.3 2,758,060 + yfjI b2625 0.75 +1.3 2,758,599 + +1.3 2,758,650 - yfjJ b2626 0.13 +1.3 2,758,742 + yfjJ b2626 0.28 +1.3 2,758,744 - yfjJ b2626 0.28 +1.3 2,758,744 - yfjJ b2626 0.28 +1.3 2,758,760 + yfjJ b2626 0.30 +1.3 2,758,784 + yfjJ b2626 0.34 +1.3 2,758,820 + yfjJ b2626 0.40 +1.3 2,758,828 + yfjJ b2626 0.41 -0.7 2,758,900 - yfjJ b2626 0.53 +1.0 2,758,934 - yfjJ b2626 0.58 +0.3 2,758,973 - yfjJ b2626 0.64 +1.0 2,758,987 - yfjJ b2626 0.67 -2.3 2,758,989 + yfjJ b2626 0.67 +0.6 2,758,989 + yfjJ b2626 0.67 +0.0 2,758,989 + yfjJ b2626 0.67 -0.3 2,758,989 + yfjJ b2626 0.67 -2.6 2,758,989 + yfjJ b2626 0.67 +0.6 2,758,989 + yfjJ b2626 0.67 -0.1 2,758,989 + yfjJ b2626 0.67 +0.4 2,758,989 + yfjJ b2626 0.67 -1.7 2,758,989 + yfjJ b2626 0.67 +1.1 2,758,994 + yfjJ b2626 0.68 -2.5 2,758,996 + yfjJ b2626 0.68 +0.9 2,758,996 + yfjJ b2626 0.68 +1.1 2,758,997 - yfjJ b2626 0.68 -1.5 2,758,997 - yfjJ b2626 0.68 +0.7 2,758,997 - yfjJ b2626 0.68 -1.0 2,758,997 - yfjJ b2626 0.68 +3.5 2,758,997 - yfjJ b2626 0.68 -0.0 2,758,997 - yfjJ b2626 0.68 +1.1 2,758,997 - yfjJ b2626 0.68 +0.0 2,758,997 - yfjJ b2626 0.68 -0.3 2,758,997 - yfjJ b2626 0.68 +1.3 2,758,997 - yfjJ b2626 0.68 +1.1 2,758,999 + yfjJ b2626 0.69 +0.2 2,758,999 - yfjJ b2626 0.69 +1.1 2,759,002 - yfjJ b2626 0.69 +0.3 2,759,005 - yfjJ b2626 0.70 -0.5 2,759,007 - yfjJ b2626 0.70 +1.8 2,759,007 - yfjJ b2626 0.70 +1.6 2,759,007 - yfjJ b2626 0.70 -0.7 2,759,010 - yfjJ b2626 0.70 -0.5 2,759,010 - yfjJ b2626 0.70 -0.3 2,759,011 + yfjJ b2626 0.70 -0.1 2,759,013 + yfjJ b2626 0.71 +1.0 2,759,013 + yfjJ b2626 0.71 +0.9 2,759,013 + yfjJ b2626 0.71 -0.2 2,759,013 + yfjJ b2626 0.71 +1.3 2,759,013 + yfjJ b2626 0.71 -1.3 2,759,019 - yfjJ b2626 0.72 +0.6 2,759,019 - yfjJ b2626 0.72 +0.5 2,759,021 - yfjJ b2626 0.72 +0.2 2,759,021 - yfjJ b2626 0.72 +0.3 2,759,021 - yfjJ b2626 0.72 +0.0 2,759,021 - yfjJ b2626 0.72 +0.0 2,759,021 - yfjJ b2626 0.72 -0.3 2,759,021 - yfjJ b2626 0.72 +0.3 2,759,021 - yfjJ b2626 0.72 +0.9 2,759,079 - yfjJ b2626 0.81 +1.5 2,759,081 + yfjJ b2626 0.82 +0.5 2,759,081 + yfjJ b2626 0.82 +1.1 2,759,094 - yfjJ b2626 0.84 -1.0 2,759,096 + yfjJ b2626 0.84 -1.8 2,759,096 + yfjJ b2626 0.84 +0.6 2,759,096 + yfjJ b2626 0.84 +1.4 2,759,096 + yfjJ b2626 0.84 +0.8 2,759,096 + yfjJ b2626 0.84 +0.2 2,759,096 + yfjJ b2626 0.84 +0.4 2,759,114 + yfjJ b2626 0.87 +1.7 2,759,138 + +1.3 2,759,138 + +1.8 2,759,149 + +0.7 2,759,176 - +0.6 2,759,176 - +1.3 2,759,228 - -0.8 2,759,238 - +0.6 2,759,243 - -0.9 2,759,286 - +0.1 2,759,286 - +1.0 2,759,296 - +0.7 2,759,296 - +0.6 2,759,296 - +0.7 2,759,296 - +0.1 2,759,296 - -0.6 2,759,299 - +0.5 2,759,299 - +0.2 2,759,299 - +0.3 2,759,324 - +0.8 2,759,324 - -0.6 2,759,389 - -0.7 2,759,408 - +0.3 2,759,411 + -2.3
Or see this region's nucleotide sequence