Strain Fitness in Escherichia coli BW25113 around b1664

Experiment: 20 hr rep1_No_BD100_grewON

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdtK and ydhQ are separated by 40 nucleotidesydhQ and valV are separated by 307 nucleotidesvalV and valW are separated by 4 nucleotidesvalW and ydhR are separated by 107 nucleotides b1663: mdtK - multidrug efflux protein NorM (NCBI), at 1,741,481 to 1,742,854 mdtK b1664: ydhQ - hypothetical protein (NCBI), at 1,742,895 to 1,744,151 ydhQ b1665: valV - tRNA-Val (NCBI), at 1,744,459 to 1,744,535 valV b1666: valW - tRNA-Val (NCBI), at 1,744,540 to 1,744,616 valW b1667: ydhR - hypothetical protein (NCBI), at 1,744,724 to 1,745,029 ydhR Position (kb) 1742 1743 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1at 1741.928 kb on - strand, within mdtKat 1742.088 kb on - strand, within mdtKat 1742.235 kb on + strand, within mdtKat 1742.237 kb on + strand, within mdtKat 1742.253 kb on - strand, within mdtKat 1742.299 kb on + strand, within mdtKat 1742.419 kb on - strand, within mdtKat 1742.436 kb on - strand, within mdtKat 1742.514 kb on - strand, within mdtKat 1742.528 kb on + strand, within mdtKat 1742.696 kb on - strand, within mdtKat 1742.696 kb on - strand, within mdtKat 1742.902 kb on + strandat 1742.950 kb on + strandat 1743.088 kb on + strand, within ydhQat 1743.088 kb on + strand, within ydhQat 1743.220 kb on + strand, within ydhQat 1743.220 kb on + strand, within ydhQat 1743.225 kb on + strand, within ydhQat 1743.230 kb on + strand, within ydhQat 1743.233 kb on - strand, within ydhQat 1743.380 kb on + strand, within ydhQat 1743.398 kb on - strand, within ydhQat 1743.446 kb on + strand, within ydhQat 1743.446 kb on + strand, within ydhQat 1743.596 kb on - strand, within ydhQat 1743.597 kb on - strand, within ydhQat 1743.597 kb on - strand, within ydhQat 1743.666 kb on - strand, within ydhQat 1743.892 kb on + strand, within ydhQat 1744.114 kb on + strandat 1744.176 kb on - strandat 1744.194 kb on - strandat 1744.570 kb on + strand, within valWat 1744.671 kb on - strandat 1744.797 kb on - strand, within ydhRat 1744.953 kb on + strand, within ydhR

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 hr rep1_No_BD100_grewON
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1,741,928 - mdtK b1663 0.33 +0.6
1,742,088 - mdtK b1663 0.44 +0.6
1,742,235 + mdtK b1663 0.55 +0.4
1,742,237 + mdtK b1663 0.55 +1.4
1,742,253 - mdtK b1663 0.56 +0.6
1,742,299 + mdtK b1663 0.60 +0.6
1,742,419 - mdtK b1663 0.68 -0.4
1,742,436 - mdtK b1663 0.70 -0.0
1,742,514 - mdtK b1663 0.75 -1.4
1,742,528 + mdtK b1663 0.76 +0.1
1,742,696 - mdtK b1663 0.88 -0.9
1,742,696 - mdtK b1663 0.88 +0.7
1,742,902 + -0.2
1,742,950 + -0.1
1,743,088 + ydhQ b1664 0.15 -1.3
1,743,088 + ydhQ b1664 0.15 -1.3
1,743,220 + ydhQ b1664 0.26 -2.9
1,743,220 + ydhQ b1664 0.26 -2.7
1,743,225 + ydhQ b1664 0.26 +0.9
1,743,230 + ydhQ b1664 0.27 -0.7
1,743,233 - ydhQ b1664 0.27 -1.3
1,743,380 + ydhQ b1664 0.39 +0.3
1,743,398 - ydhQ b1664 0.40 -0.9
1,743,446 + ydhQ b1664 0.44 +0.1
1,743,446 + ydhQ b1664 0.44 -3.3
1,743,596 - ydhQ b1664 0.56 +0.3
1,743,597 - ydhQ b1664 0.56 -0.4
1,743,597 - ydhQ b1664 0.56 +0.6
1,743,666 - ydhQ b1664 0.61 -1.9
1,743,892 + ydhQ b1664 0.79 -0.3
1,744,114 + +0.5
1,744,176 - +0.0
1,744,194 - -0.0
1,744,570 + valW b1666 0.39 +0.3
1,744,671 - +0.7
1,744,797 - ydhR b1667 0.24 +0.3
1,744,953 + ydhR b1667 0.75 +0.1

Or see this region's nucleotide sequence