Experiment: 20 hr rep1_No_BD100_grewON
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1498 and ydeO are separated by 401 nucleotides ydeO and yneN are separated by 74 nucleotides yneN and YdeP are separated by 247 nucleotides
b1498: b1498 - putative sulfatase (VIMSS), at 1,578,866 to 1,580,548
b1498
b1499: ydeO - predicted DNA-binding transcriptional acfivator (NCBI), at 1,580,950 to 1,581,711
ydeO
b1500: yneN - Two component system connector membrane protein, EvgSA to PhoQP (RefSeq), at 1,581,786 to 1,581,983
yneN
b1501: YdeP - putative oxidoreductase, major subunit, acid resistance protein (Katherine Huang), at 1,582,231 to 1,584,510
YdeP
Position (kb)
1580
1581
1582 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1579.961 kb on + strand, within b1498 at 1579.980 kb on - strand, within b1498 at 1580.024 kb on - strand, within b1498 at 1580.063 kb on + strand, within b1498 at 1580.078 kb on - strand, within b1498 at 1580.112 kb on - strand, within b1498 at 1580.124 kb on - strand, within b1498 at 1580.147 kb on - strand, within b1498 at 1580.172 kb on - strand, within b1498 at 1580.174 kb on + strand, within b1498 at 1580.186 kb on + strand, within b1498 at 1580.201 kb on - strand, within b1498 at 1580.281 kb on - strand, within b1498 at 1580.352 kb on + strand, within b1498 at 1580.383 kb on + strand at 1580.454 kb on - strand at 1580.497 kb on + strand at 1580.525 kb on - strand at 1580.539 kb on - strand at 1580.549 kb on - strand at 1580.918 kb on - strand at 1580.924 kb on + strand at 1580.978 kb on + strand at 1581.015 kb on + strand at 1581.015 kb on + strand at 1581.085 kb on - strand, within ydeO at 1581.214 kb on - strand, within ydeO at 1582.355 kb on + strand at 1582.363 kb on - strand at 1582.363 kb on - strand at 1582.363 kb on - strand at 1582.370 kb on - strand at 1582.400 kb on - strand at 1582.400 kb on - strand at 1582.409 kb on - strand at 1582.463 kb on + strand, within YdeP at 1582.512 kb on + strand, within YdeP at 1582.515 kb on - strand, within YdeP at 1582.527 kb on + strand, within YdeP at 1582.530 kb on + strand, within YdeP at 1582.538 kb on - strand, within YdeP at 1582.538 kb on - strand, within YdeP at 1582.564 kb on + strand, within YdeP at 1582.575 kb on - strand, within YdeP
Per-strain Table
Position Strand Gene LocusTag Fraction 20 hr rep1_No_BD100_grewON remove 1,579,961 + b1498 b1498 0.65 -1.3 1,579,980 - b1498 b1498 0.66 +0.7 1,580,024 - b1498 b1498 0.69 +0.7 1,580,063 + b1498 b1498 0.71 +0.7 1,580,078 - b1498 b1498 0.72 +1.1 1,580,112 - b1498 b1498 0.74 -0.9 1,580,124 - b1498 b1498 0.75 +2.1 1,580,147 - b1498 b1498 0.76 -1.9 1,580,172 - b1498 b1498 0.78 +0.7 1,580,174 + b1498 b1498 0.78 +0.5 1,580,186 + b1498 b1498 0.78 -0.3 1,580,201 - b1498 b1498 0.79 +0.7 1,580,281 - b1498 b1498 0.84 -0.6 1,580,352 + b1498 b1498 0.88 -3.0 1,580,383 + -2.2 1,580,454 - +0.3 1,580,497 + +0.2 1,580,525 - -1.4 1,580,539 - -1.4 1,580,549 - +0.2 1,580,918 - +0.6 1,580,924 + +1.6 1,580,978 + -0.4 1,581,015 + -1.9 1,581,015 + +0.4 1,581,085 - ydeO b1499 0.18 +0.6 1,581,214 - ydeO b1499 0.35 -0.9 1,582,355 + +1.6 1,582,363 - +0.2 1,582,363 - +0.7 1,582,363 - +1.2 1,582,370 - -0.7 1,582,400 - +0.1 1,582,400 - -1.5 1,582,409 - +0.2 1,582,463 + YdeP b1501 0.10 -0.4 1,582,512 + YdeP b1501 0.12 +0.6 1,582,515 - YdeP b1501 0.12 -0.2 1,582,527 + YdeP b1501 0.13 -0.6 1,582,530 + YdeP b1501 0.13 +1.1 1,582,538 - YdeP b1501 0.13 +0.6 1,582,538 - YdeP b1501 0.13 +0.4 1,582,564 + YdeP b1501 0.15 -0.4 1,582,575 - YdeP b1501 0.15 +0.2
Or see this region's nucleotide sequence