Strain Fitness in Escherichia coli BW25113 around b1074

Experiment: 6 hr rep2_HD100_10fold_dilution_grewON

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgA and flgB are separated by 154 nucleotidesflgB and flgC are separated by 3 nucleotidesflgC and flgD are separated by 11 nucleotidesflgD and flgE are separated by 24 nucleotides b1072: flgA - flagellar basal body P-ring biosynthesis protein A (NCBI), at 1,129,427 to 1,130,086 flgA b1073: flgB - flagellar basal-body rod protein B (NCBI), at 1,130,241 to 1,130,657 flgB b1074: flgC - flagellar basal-body rod protein C (NCBI), at 1,130,661 to 1,131,065 flgC b1075: flgD - flagellar basal body rod modification protein D (NCBI), at 1,131,077 to 1,131,772 flgD b1076: flgE - flagellar hook protein E (NCBI), at 1,131,797 to 1,133,005 flgE Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1129.663 kb on + strand, within flgAat 1129.716 kb on + strand, within flgAat 1129.771 kb on + strand, within flgAat 1129.771 kb on + strand, within flgAat 1129.810 kb on + strand, within flgAat 1129.811 kb on - strand, within flgAat 1129.813 kb on + strand, within flgAat 1129.815 kb on + strand, within flgAat 1129.815 kb on + strand, within flgAat 1129.958 kb on + strand, within flgAat 1130.045 kb on + strandat 1130.097 kb on + strandat 1130.110 kb on + strandat 1130.161 kb on + strandat 1130.236 kb on - strandat 1130.238 kb on - strandat 1130.238 kb on - strandat 1130.270 kb on - strandat 1130.352 kb on - strand, within flgBat 1130.352 kb on - strand, within flgBat 1130.411 kb on + strand, within flgBat 1130.411 kb on + strand, within flgBat 1130.456 kb on - strand, within flgBat 1130.456 kb on - strand, within flgBat 1130.513 kb on - strand, within flgBat 1130.570 kb on - strand, within flgBat 1130.693 kb on - strandat 1130.701 kb on + strandat 1131.014 kb on + strand, within flgCat 1131.014 kb on + strand, within flgCat 1131.054 kb on - strandat 1131.111 kb on + strandat 1131.325 kb on + strand, within flgDat 1131.362 kb on - strand, within flgDat 1131.362 kb on - strand, within flgDat 1131.586 kb on + strand, within flgDat 1131.594 kb on - strand, within flgDat 1131.794 kb on + strandat 1131.794 kb on + strandat 1131.846 kb on - strandat 1131.996 kb on - strand, within flgEat 1131.996 kb on - strand, within flgEat 1132.002 kb on - strand, within flgEat 1132.010 kb on + strand, within flgE

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 hr rep2_HD100_10fold_dilution_grewON
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1,129,663 + flgA b1072 0.36 +0.4
1,129,716 + flgA b1072 0.44 -2.5
1,129,771 + flgA b1072 0.52 -0.0
1,129,771 + flgA b1072 0.52 -3.4
1,129,810 + flgA b1072 0.58 +1.7
1,129,811 - flgA b1072 0.58 +0.6
1,129,813 + flgA b1072 0.58 -0.2
1,129,815 + flgA b1072 0.59 +2.0
1,129,815 + flgA b1072 0.59 +0.5
1,129,958 + flgA b1072 0.80 +2.9
1,130,045 + +0.4
1,130,097 + +0.6
1,130,110 + -4.9
1,130,161 + -0.9
1,130,236 - -0.1
1,130,238 - -0.2
1,130,238 - -1.3
1,130,270 - +1.1
1,130,352 - flgB b1073 0.27 -0.3
1,130,352 - flgB b1073 0.27 +2.4
1,130,411 + flgB b1073 0.41 +1.1
1,130,411 + flgB b1073 0.41 +3.6
1,130,456 - flgB b1073 0.52 -5.1
1,130,456 - flgB b1073 0.52 -0.6
1,130,513 - flgB b1073 0.65 +1.3
1,130,570 - flgB b1073 0.79 -3.7
1,130,693 - +1.2
1,130,701 + -0.0
1,131,014 + flgC b1074 0.87 -0.6
1,131,014 + flgC b1074 0.87 -3.4
1,131,054 - -4.5
1,131,111 + +1.0
1,131,325 + flgD b1075 0.36 +3.0
1,131,362 - flgD b1075 0.41 +1.1
1,131,362 - flgD b1075 0.41 -0.1
1,131,586 + flgD b1075 0.73 -0.8
1,131,594 - flgD b1075 0.74 -2.0
1,131,794 + +1.2
1,131,794 + +0.6
1,131,846 - +1.0
1,131,996 - flgE b1076 0.16 -4.9
1,131,996 - flgE b1076 0.16 -0.7
1,132,002 - flgE b1076 0.17 -4.0
1,132,010 + flgE b1076 0.18 +1.6

Or see this region's nucleotide sequence