Experiment: 6 hr rep2_HD100_10fold_dilution_grewON
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dmsC and ycaC are separated by 34 nucleotides ycaC and ycaD are separated by 313 nucleotides ycaD and b0899 are separated by 209 nucleotides
b0896: dmsC - dimethyl sulfoxide reductase, anaerobic, subunit C (NCBI), at 943,256 to 944,119
dmsC
b0897: ycaC - predicted hydrolase (NCBI), at 944,154 to 944,780
ycaC
b0898: ycaD - putative MFS family transporter protein (NCBI), at 945,094 to 946,242
ycaD
b0899: b0899 - putative transport (VIMSS), at 946,452 to 947,882
b0899
Position (kb) 945
946
947 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 944.101 kb on - strand at 944.105 kb on + strand at 944.105 kb on + strand at 944.121 kb on + strand at 944.286 kb on - strand, within ycaC at 944.286 kb on - strand, within ycaC at 944.287 kb on - strand, within ycaC at 944.287 kb on - strand, within ycaC at 944.291 kb on - strand, within ycaC at 944.291 kb on - strand, within ycaC at 944.300 kb on - strand, within ycaC at 944.536 kb on + strand, within ycaC at 944.536 kb on + strand, within ycaC at 944.536 kb on + strand, within ycaC at 944.536 kb on + strand, within ycaC at 944.575 kb on - strand, within ycaC at 944.578 kb on + strand, within ycaC at 945.014 kb on + strand at 945.058 kb on - strand at 945.121 kb on + strand at 945.183 kb on + strand at 945.220 kb on - strand, within ycaD at 945.316 kb on + strand, within ycaD at 945.316 kb on + strand, within ycaD at 945.358 kb on + strand, within ycaD at 945.361 kb on - strand, within ycaD at 945.361 kb on - strand, within ycaD at 945.414 kb on - strand, within ycaD at 945.463 kb on - strand, within ycaD at 945.549 kb on + strand, within ycaD at 945.549 kb on + strand, within ycaD at 945.609 kb on - strand, within ycaD at 945.750 kb on + strand at 945.750 kb on + strand, within ycaD at 945.755 kb on + strand, within ycaD at 945.792 kb on - strand, within ycaD at 945.792 kb on - strand, within ycaD at 945.806 kb on + strand, within ycaD at 945.847 kb on - strand, within ycaD at 945.901 kb on + strand, within ycaD at 945.901 kb on + strand, within ycaD at 945.919 kb on + strand, within ycaD at 945.994 kb on + strand, within ycaD at 946.054 kb on + strand, within ycaD at 946.060 kb on + strand, within ycaD at 946.064 kb on + strand, within ycaD at 946.064 kb on + strand, within ycaD at 946.072 kb on + strand, within ycaD at 946.077 kb on + strand, within ycaD at 946.077 kb on + strand, within ycaD at 946.084 kb on + strand, within ycaD at 946.107 kb on + strand, within ycaD at 946.107 kb on + strand, within ycaD at 946.144 kb on + strand at 946.200 kb on - strand at 946.200 kb on - strand at 946.236 kb on + strand at 946.248 kb on + strand at 946.248 kb on + strand at 946.256 kb on + strand at 946.256 kb on + strand at 946.392 kb on - strand at 946.395 kb on - strand at 946.406 kb on + strand at 946.456 kb on - strand at 946.456 kb on - strand at 946.464 kb on + strand at 946.464 kb on - strand at 946.464 kb on - strand at 946.472 kb on - strand at 946.485 kb on + strand at 946.485 kb on + strand at 946.492 kb on + strand at 946.492 kb on + strand at 946.493 kb on + strand at 946.493 kb on + strand at 946.494 kb on - strand at 946.495 kb on - strand at 946.495 kb on - strand at 946.495 kb on - strand at 946.495 kb on - strand at 946.506 kb on + strand at 946.518 kb on + strand at 946.518 kb on + strand at 946.526 kb on - strand at 946.547 kb on - strand at 946.556 kb on - strand at 946.563 kb on - strand at 946.563 kb on - strand at 946.563 kb on - strand at 946.584 kb on + strand at 946.605 kb on + strand, within b0899 at 946.611 kb on - strand, within b0899 at 946.611 kb on - strand, within b0899 at 946.611 kb on - strand, within b0899 at 946.612 kb on - strand, within b0899 at 946.634 kb on + strand, within b0899 at 946.642 kb on - strand, within b0899 at 946.644 kb on + strand, within b0899 at 946.644 kb on + strand, within b0899 at 946.645 kb on - strand, within b0899 at 946.653 kb on - strand, within b0899 at 946.661 kb on - strand, within b0899 at 946.661 kb on - strand, within b0899 at 946.661 kb on - strand, within b0899 at 946.662 kb on + strand, within b0899 at 946.680 kb on - strand, within b0899 at 946.680 kb on - strand, within b0899 at 946.696 kb on + strand, within b0899 at 946.697 kb on + strand, within b0899 at 946.704 kb on - strand, within b0899 at 946.704 kb on - strand, within b0899 at 946.706 kb on + strand, within b0899 at 946.706 kb on + strand, within b0899 at 946.711 kb on + strand, within b0899 at 946.737 kb on - strand, within b0899 at 946.739 kb on + strand, within b0899 at 946.743 kb on + strand, within b0899 at 946.745 kb on + strand, within b0899 at 946.847 kb on - strand, within b0899 at 946.847 kb on - strand, within b0899 at 946.849 kb on - strand, within b0899 at 946.882 kb on + strand, within b0899 at 946.887 kb on + strand, within b0899 at 946.887 kb on + strand, within b0899 at 946.897 kb on + strand, within b0899 at 946.905 kb on - strand, within b0899 at 946.905 kb on - strand, within b0899 at 946.924 kb on + strand, within b0899 at 946.939 kb on + strand, within b0899 at 946.941 kb on - strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.956 kb on + strand, within b0899 at 946.966 kb on - strand, within b0899 at 946.966 kb on - strand, within b0899 at 947.000 kb on + strand, within b0899 at 947.054 kb on - strand, within b0899 at 947.064 kb on - strand, within b0899 at 947.068 kb on + strand, within b0899 at 947.109 kb on - strand, within b0899 at 947.109 kb on - strand, within b0899 at 947.117 kb on + strand, within b0899 at 947.168 kb on + strand, within b0899 at 947.168 kb on + strand, within b0899 at 947.184 kb on - strand, within b0899 at 947.187 kb on + strand, within b0899 at 947.197 kb on + strand, within b0899 at 947.202 kb on + strand, within b0899 at 947.202 kb on + strand, within b0899 at 947.202 kb on + strand, within b0899 at 947.202 kb on + strand, within b0899 at 947.205 kb on - strand, within b0899 at 947.212 kb on + strand, within b0899 at 947.212 kb on + strand, within b0899 at 947.220 kb on - strand, within b0899 at 947.224 kb on + strand, within b0899 at 947.224 kb on + strand, within b0899 at 947.240 kb on + strand, within b0899
Per-strain Table
Position Strand Gene LocusTag Fraction 6 hr rep2_HD100_10fold_dilution_grewON remove 944,101 - -2.0 944,105 + +0.5 944,105 + -4.6 944,121 + +0.6 944,286 - ycaC b0897 0.21 +0.6 944,286 - ycaC b0897 0.21 -1.0 944,287 - ycaC b0897 0.21 +0.3 944,287 - ycaC b0897 0.21 -1.3 944,291 - ycaC b0897 0.22 +1.4 944,291 - ycaC b0897 0.22 +0.4 944,300 - ycaC b0897 0.23 +1.5 944,536 + ycaC b0897 0.61 -3.9 944,536 + ycaC b0897 0.61 -3.2 944,536 + ycaC b0897 0.61 -3.8 944,536 + ycaC b0897 0.61 -1.0 944,575 - ycaC b0897 0.67 +2.6 944,578 + ycaC b0897 0.68 -0.4 945,014 + +1.6 945,058 - -3.8 945,121 + -2.8 945,183 + -1.7 945,220 - ycaD b0898 0.11 -0.3 945,316 + ycaD b0898 0.19 -4.8 945,316 + ycaD b0898 0.19 -2.8 945,358 + ycaD b0898 0.23 +1.1 945,361 - ycaD b0898 0.23 +0.3 945,361 - ycaD b0898 0.23 +1.9 945,414 - ycaD b0898 0.28 -3.6 945,463 - ycaD b0898 0.32 -1.4 945,549 + ycaD b0898 0.40 -0.4 945,549 + ycaD b0898 0.40 +0.5 945,609 - ycaD b0898 0.45 -2.2 945,750 + -1.4 945,750 + ycaD b0898 0.57 +0.7 945,755 + ycaD b0898 0.58 -3.0 945,792 - ycaD b0898 0.61 -2.0 945,792 - ycaD b0898 0.61 -1.4 945,806 + ycaD b0898 0.62 -0.7 945,847 - ycaD b0898 0.66 -2.8 945,901 + ycaD b0898 0.70 -1.5 945,901 + ycaD b0898 0.70 +0.6 945,919 + ycaD b0898 0.72 +0.2 945,994 + ycaD b0898 0.78 -0.4 946,054 + ycaD b0898 0.84 -2.7 946,060 + ycaD b0898 0.84 -2.0 946,064 + ycaD b0898 0.84 -3.8 946,064 + ycaD b0898 0.84 -4.6 946,072 + ycaD b0898 0.85 -4.8 946,077 + ycaD b0898 0.86 +0.6 946,077 + ycaD b0898 0.86 +0.1 946,084 + ycaD b0898 0.86 +0.9 946,107 + ycaD b0898 0.88 +1.5 946,107 + ycaD b0898 0.88 +0.0 946,144 + +0.6 946,200 - +1.2 946,200 - +1.2 946,236 + +1.1 946,248 + +0.4 946,248 + -0.1 946,256 + -0.2 946,256 + +1.1 946,392 - +1.1 946,395 - -1.3 946,406 + -0.8 946,456 - -0.1 946,456 - +0.6 946,464 + -1.4 946,464 - +0.0 946,464 - -0.1 946,472 - +0.8 946,485 + -1.7 946,485 + +1.9 946,492 + -2.0 946,492 + -2.0 946,493 + -3.2 946,493 + -2.4 946,494 - +1.8 946,495 - -0.1 946,495 - -3.2 946,495 - -3.4 946,495 - +1.5 946,506 + +2.0 946,518 + +1.2 946,518 + -4.2 946,526 - +1.3 946,547 - +0.1 946,556 - +3.3 946,563 - -2.3 946,563 - +0.9 946,563 - +0.7 946,584 + -4.1 946,605 + b0899 b0899 0.11 +1.2 946,611 - b0899 b0899 0.11 -0.4 946,611 - b0899 b0899 0.11 -3.1 946,611 - b0899 b0899 0.11 +1.2 946,612 - b0899 b0899 0.11 +0.6 946,634 + b0899 b0899 0.13 -4.7 946,642 - b0899 b0899 0.13 +0.7 946,644 + b0899 b0899 0.13 -2.5 946,644 + b0899 b0899 0.13 -1.2 946,645 - b0899 b0899 0.13 +1.3 946,653 - b0899 b0899 0.14 -3.9 946,661 - b0899 b0899 0.15 -5.2 946,661 - b0899 b0899 0.15 +1.3 946,661 - b0899 b0899 0.15 -0.5 946,662 + b0899 b0899 0.15 -0.4 946,680 - b0899 b0899 0.16 -3.2 946,680 - b0899 b0899 0.16 +3.7 946,696 + b0899 b0899 0.17 -2.4 946,697 + b0899 b0899 0.17 +1.2 946,704 - b0899 b0899 0.18 +0.7 946,704 - b0899 b0899 0.18 -3.3 946,706 + b0899 b0899 0.18 +0.2 946,706 + b0899 b0899 0.18 +2.8 946,711 + b0899 b0899 0.18 -3.7 946,737 - b0899 b0899 0.20 -3.5 946,739 + b0899 b0899 0.20 -3.2 946,743 + b0899 b0899 0.20 +0.2 946,745 + b0899 b0899 0.20 +2.4 946,847 - b0899 b0899 0.28 -4.3 946,847 - b0899 b0899 0.28 -0.1 946,849 - b0899 b0899 0.28 +2.4 946,882 + b0899 b0899 0.30 -2.0 946,887 + b0899 b0899 0.30 +1.7 946,887 + b0899 b0899 0.30 -3.7 946,897 + b0899 b0899 0.31 +0.2 946,905 - b0899 b0899 0.32 +0.7 946,905 - b0899 b0899 0.32 -3.0 946,924 + b0899 b0899 0.33 +3.8 946,939 + b0899 b0899 0.34 -3.1 946,941 - b0899 b0899 0.34 -0.8 946,956 + b0899 b0899 0.35 -3.2 946,956 + b0899 b0899 0.35 -3.4 946,956 + b0899 b0899 0.35 -1.7 946,956 + b0899 b0899 0.35 +1.6 946,956 + b0899 b0899 0.35 -0.4 946,956 + b0899 b0899 0.35 +1.2 946,956 + b0899 b0899 0.35 +0.6 946,966 - b0899 b0899 0.36 -0.8 946,966 - b0899 b0899 0.36 +1.2 947,000 + b0899 b0899 0.38 -3.2 947,054 - b0899 b0899 0.42 +1.2 947,064 - b0899 b0899 0.43 -1.7 947,068 + b0899 b0899 0.43 +0.5 947,109 - b0899 b0899 0.46 +1.2 947,109 - b0899 b0899 0.46 +1.2 947,117 + b0899 b0899 0.46 +0.3 947,168 + b0899 b0899 0.50 -0.4 947,168 + b0899 b0899 0.50 -4.6 947,184 - b0899 b0899 0.51 -2.2 947,187 + b0899 b0899 0.51 +2.2 947,197 + b0899 b0899 0.52 -1.6 947,202 + b0899 b0899 0.52 +1.5 947,202 + b0899 b0899 0.52 +2.1 947,202 + b0899 b0899 0.52 +2.1 947,202 + b0899 b0899 0.52 +0.5 947,205 - b0899 b0899 0.53 -3.5 947,212 + b0899 b0899 0.53 +1.9 947,212 + b0899 b0899 0.53 +2.7 947,220 - b0899 b0899 0.54 +1.2 947,224 + b0899 b0899 0.54 +0.7 947,224 + b0899 b0899 0.54 -4.1 947,240 + b0899 b0899 0.55 +1.6
Or see this region's nucleotide sequence