Experiment: 6 hr rep1_HD100_10fold_dilution_grewON
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeiQ and yeiR are separated by 117 nucleotides yeiR and b2174 are separated by 38 nucleotides
b2172: yeiQ - predicted dehydrogenase, NAD-dependent (NCBI), at 2,264,267 to 2,265,733
yeiQ
b2173: yeiR - predicted enzyme (NCBI), at 2,265,851 to 2,266,837
yeiR
b2174: b2174 - orf, hypothetical protein (VIMSS), at 2,266,876 to 2,267,589
b2174
Position (kb)
2265
2266
2267 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2264.946 kb on + strand, within yeiQ at 2264.946 kb on + strand, within yeiQ at 2265.000 kb on - strand, within yeiQ at 2265.000 kb on - strand, within yeiQ at 2265.002 kb on - strand, within yeiQ at 2265.069 kb on - strand, within yeiQ at 2265.069 kb on - strand, within yeiQ at 2265.167 kb on + strand, within yeiQ at 2265.167 kb on + strand, within yeiQ at 2265.252 kb on - strand, within yeiQ at 2265.271 kb on + strand, within yeiQ at 2265.379 kb on + strand, within yeiQ at 2265.379 kb on - strand, within yeiQ at 2265.455 kb on + strand, within yeiQ at 2265.455 kb on + strand, within yeiQ at 2265.488 kb on - strand, within yeiQ at 2265.694 kb on - strand at 2265.889 kb on + strand at 2266.013 kb on + strand, within yeiR at 2266.036 kb on + strand, within yeiR at 2266.036 kb on + strand, within yeiR at 2266.075 kb on + strand, within yeiR at 2266.091 kb on - strand, within yeiR at 2266.182 kb on - strand, within yeiR at 2266.182 kb on - strand, within yeiR at 2266.191 kb on - strand, within yeiR at 2266.207 kb on + strand, within yeiR at 2266.223 kb on - strand, within yeiR at 2266.223 kb on - strand, within yeiR at 2266.421 kb on - strand, within yeiR at 2266.421 kb on - strand, within yeiR at 2266.461 kb on - strand, within yeiR at 2266.588 kb on - strand, within yeiR at 2266.651 kb on + strand, within yeiR at 2266.651 kb on + strand, within yeiR at 2266.666 kb on + strand, within yeiR at 2266.911 kb on - strand at 2266.965 kb on - strand, within b2174 at 2266.965 kb on - strand, within b2174 at 2267.048 kb on - strand, within b2174 at 2267.073 kb on - strand, within b2174 at 2267.090 kb on - strand, within b2174 at 2267.090 kb on - strand, within b2174 at 2267.171 kb on - strand, within b2174 at 2267.174 kb on + strand, within b2174 at 2267.185 kb on + strand, within b2174 at 2267.185 kb on + strand, within b2174 at 2267.185 kb on + strand, within b2174 at 2267.185 kb on + strand, within b2174 at 2267.231 kb on + strand, within b2174 at 2267.231 kb on + strand, within b2174 at 2267.323 kb on - strand, within b2174 at 2267.428 kb on + strand, within b2174 at 2267.457 kb on - strand, within b2174 at 2267.490 kb on - strand, within b2174 at 2267.496 kb on + strand, within b2174 at 2267.496 kb on + strand, within b2174 at 2267.496 kb on + strand, within b2174 at 2267.497 kb on + strand, within b2174 at 2267.515 kb on + strand, within b2174 at 2267.515 kb on + strand, within b2174 at 2267.522 kb on - strand at 2267.523 kb on - strand at 2267.535 kb on - strand at 2267.618 kb on + strand at 2267.628 kb on - strand at 2267.628 kb on - strand at 2267.638 kb on - strand at 2267.638 kb on - strand at 2267.644 kb on - strand at 2267.644 kb on - strand at 2267.645 kb on + strand at 2267.659 kb on - strand at 2267.659 kb on - strand at 2267.661 kb on - strand at 2267.793 kb on - strand at 2267.806 kb on - strand at 2267.817 kb on + strand at 2267.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 hr rep1_HD100_10fold_dilution_grewON remove 2,264,946 + yeiQ b2172 0.46 +0.9 2,264,946 + yeiQ b2172 0.46 +1.1 2,265,000 - yeiQ b2172 0.50 +1.1 2,265,000 - yeiQ b2172 0.50 -0.0 2,265,002 - yeiQ b2172 0.50 -3.7 2,265,069 - yeiQ b2172 0.55 +1.3 2,265,069 - yeiQ b2172 0.55 +2.1 2,265,167 + yeiQ b2172 0.61 +0.1 2,265,167 + yeiQ b2172 0.61 -4.3 2,265,252 - yeiQ b2172 0.67 -3.5 2,265,271 + yeiQ b2172 0.68 +0.4 2,265,379 + yeiQ b2172 0.76 -3.8 2,265,379 - yeiQ b2172 0.76 -0.8 2,265,455 + yeiQ b2172 0.81 +0.1 2,265,455 + yeiQ b2172 0.81 +2.0 2,265,488 - yeiQ b2172 0.83 +0.5 2,265,694 - -0.6 2,265,889 + +1.1 2,266,013 + yeiR b2173 0.16 +0.2 2,266,036 + yeiR b2173 0.19 +0.9 2,266,036 + yeiR b2173 0.19 -0.9 2,266,075 + yeiR b2173 0.23 +2.0 2,266,091 - yeiR b2173 0.24 -3.3 2,266,182 - yeiR b2173 0.34 -0.1 2,266,182 - yeiR b2173 0.34 -2.5 2,266,191 - yeiR b2173 0.34 -4.3 2,266,207 + yeiR b2173 0.36 -3.7 2,266,223 - yeiR b2173 0.38 +0.9 2,266,223 - yeiR b2173 0.38 -1.5 2,266,421 - yeiR b2173 0.58 -0.8 2,266,421 - yeiR b2173 0.58 +1.6 2,266,461 - yeiR b2173 0.62 -5.2 2,266,588 - yeiR b2173 0.75 -1.0 2,266,651 + yeiR b2173 0.81 -4.7 2,266,651 + yeiR b2173 0.81 +0.9 2,266,666 + yeiR b2173 0.83 +0.7 2,266,911 - +0.2 2,266,965 - b2174 b2174 0.12 +2.9 2,266,965 - b2174 b2174 0.12 -1.6 2,267,048 - b2174 b2174 0.24 +1.7 2,267,073 - b2174 b2174 0.28 +2.5 2,267,090 - b2174 b2174 0.30 -2.1 2,267,090 - b2174 b2174 0.30 -1.7 2,267,171 - b2174 b2174 0.41 +0.9 2,267,174 + b2174 b2174 0.42 +0.8 2,267,185 + b2174 b2174 0.43 +0.6 2,267,185 + b2174 b2174 0.43 +1.9 2,267,185 + b2174 b2174 0.43 +0.8 2,267,185 + b2174 b2174 0.43 +2.6 2,267,231 + b2174 b2174 0.50 +1.7 2,267,231 + b2174 b2174 0.50 -0.0 2,267,323 - b2174 b2174 0.63 -2.2 2,267,428 + b2174 b2174 0.77 -0.6 2,267,457 - b2174 b2174 0.81 -0.3 2,267,490 - b2174 b2174 0.86 -3.1 2,267,496 + b2174 b2174 0.87 -5.0 2,267,496 + b2174 b2174 0.87 -2.9 2,267,496 + b2174 b2174 0.87 +0.5 2,267,497 + b2174 b2174 0.87 +2.1 2,267,515 + b2174 b2174 0.89 -0.9 2,267,515 + b2174 b2174 0.89 +0.4 2,267,522 - +0.0 2,267,523 - +0.2 2,267,535 - -1.6 2,267,618 + +0.3 2,267,628 - -3.1 2,267,628 - -0.7 2,267,638 - +1.5 2,267,638 - +0.8 2,267,644 - +0.5 2,267,644 - +1.2 2,267,645 + -1.4 2,267,659 - +0.3 2,267,659 - -0.2 2,267,661 - +0.6 2,267,793 - -1.4 2,267,806 - +1.3 2,267,817 + +0.8 2,267,819 - -0.1
Or see this region's nucleotide sequence