Strain Fitness in Pseudomonas simiae WCS417 around PS417_13695

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13690 and PS417_13695 are separated by 110 nucleotidesPS417_13695 and PS417_13705 are separated by 357 nucleotides PS417_13690: PS417_13690 - chemotaxis protein, at 3,012,210 to 3,013,565 _13690 PS417_13695: PS417_13695 - porin, at 3,013,676 to 3,014,998 _13695 PS417_13705: PS417_13705 - oxaloacetate decarboxylase, at 3,015,356 to 3,016,225 _13705 Position (kb) 3013 3014 3015Strain fitness (log2 ratio) -1 0 1 2 3at 3012.730 kb on + strand, within PS417_13690at 3012.730 kb on + strand, within PS417_13690at 3012.730 kb on + strandat 3012.731 kb on - strandat 3012.800 kb on + strand, within PS417_13690at 3012.810 kb on + strand, within PS417_13690at 3012.810 kb on + strand, within PS417_13690at 3012.811 kb on - strand, within PS417_13690at 3012.811 kb on - strand, within PS417_13690at 3012.910 kb on - strandat 3012.910 kb on - strandat 3012.910 kb on - strand, within PS417_13690at 3012.919 kb on + strand, within PS417_13690at 3012.921 kb on + strand, within PS417_13690at 3012.921 kb on + strand, within PS417_13690at 3012.922 kb on - strand, within PS417_13690at 3013.023 kb on + strand, within PS417_13690at 3013.023 kb on + strand, within PS417_13690at 3013.028 kb on + strand, within PS417_13690at 3013.028 kb on + strand, within PS417_13690at 3013.029 kb on - strand, within PS417_13690at 3013.619 kb on + strandat 3013.619 kb on + strandat 3013.619 kb on + strandat 3013.632 kb on + strandat 3013.633 kb on - strandat 3013.633 kb on - strandat 3013.633 kb on - strandat 3013.673 kb on + strandat 3013.677 kb on + strandat 3013.677 kb on + strandat 3013.677 kb on + strandat 3013.677 kb on + strandat 3013.677 kb on + strandat 3013.677 kb on + strandat 3013.678 kb on - strandat 3013.678 kb on - strandat 3013.678 kb on - strandat 3013.678 kb on - strandat 3013.678 kb on - strandat 3013.812 kb on + strand, within PS417_13695at 3013.813 kb on - strand, within PS417_13695at 3013.813 kb on - strand, within PS417_13695at 3013.918 kb on + strandat 3013.920 kb on + strand, within PS417_13695at 3013.920 kb on + strand, within PS417_13695at 3013.920 kb on + strand, within PS417_13695at 3013.953 kb on + strand, within PS417_13695at 3013.953 kb on + strand, within PS417_13695at 3013.954 kb on - strand, within PS417_13695at 3013.954 kb on - strand, within PS417_13695at 3014.088 kb on + strandat 3014.157 kb on + strand, within PS417_13695at 3014.294 kb on - strand, within PS417_13695at 3014.294 kb on - strand, within PS417_13695at 3014.294 kb on - strand, within PS417_13695at 3014.295 kb on + strand, within PS417_13695at 3014.295 kb on + strand, within PS417_13695at 3014.295 kb on + strand, within PS417_13695at 3014.295 kb on + strand, within PS417_13695at 3014.295 kb on + strand, within PS417_13695at 3014.296 kb on - strand, within PS417_13695at 3014.296 kb on - strand, within PS417_13695at 3014.298 kb on + strand, within PS417_13695at 3014.298 kb on + strand, within PS417_13695at 3014.299 kb on - strand, within PS417_13695at 3014.331 kb on + strand, within PS417_13695at 3014.331 kb on + strand, within PS417_13695at 3014.364 kb on + strand, within PS417_13695at 3014.364 kb on + strand, within PS417_13695at 3014.418 kb on + strand, within PS417_13695at 3014.418 kb on + strand, within PS417_13695at 3014.419 kb on - strandat 3014.419 kb on - strand, within PS417_13695at 3014.419 kb on - strand, within PS417_13695at 3014.422 kb on + strand, within PS417_13695at 3014.740 kb on - strand, within PS417_13695at 3014.856 kb on + strand, within PS417_13695at 3014.859 kb on + strand, within PS417_13695at 3014.860 kb on - strand, within PS417_13695at 3014.860 kb on - strand, within PS417_13695at 3014.975 kb on + strandat 3015.018 kb on - strandat 3015.070 kb on - strandat 3015.070 kb on - strandat 3015.107 kb on + strandat 3015.331 kb on + strandat 3015.332 kb on - strandat 3015.358 kb on - strandat 3015.365 kb on + strandat 3015.365 kb on + strandat 3015.366 kb on - strandat 3015.366 kb on - strandat 3015.413 kb on - strandat 3015.413 kb on - strandat 3015.413 kb on - strandat 3015.413 kb on - strandat 3015.413 kb on - strandat 3015.413 kb on - strandat 3015.414 kb on + strandat 3015.414 kb on + strandat 3015.414 kb on + strandat 3015.414 kb on + strandat 3015.414 kb on + strandat 3015.414 kb on + strandat 3015.414 kb on + strandat 3015.415 kb on - strandat 3015.415 kb on - strandat 3015.415 kb on - strandat 3015.415 kb on - strandat 3015.489 kb on + strand, within PS417_13705at 3015.490 kb on - strand, within PS417_13705at 3015.514 kb on - strand, within PS417_13705at 3015.514 kb on - strand, within PS417_13705at 3015.592 kb on - strand, within PS417_13705at 3015.592 kb on - strand, within PS417_13705at 3015.824 kb on - strand, within PS417_13705

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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3,012,730 + PS417_13690 0.38 -0.5
3,012,730 + PS417_13690 0.38 -0.1
3,012,730 + +0.7
3,012,731 - +0.5
3,012,800 + PS417_13690 0.44 -0.1
3,012,810 + PS417_13690 0.44 +0.7
3,012,810 + PS417_13690 0.44 +0.3
3,012,811 - PS417_13690 0.44 +0.9
3,012,811 - PS417_13690 0.44 -0.0
3,012,910 - -0.3
3,012,910 - +1.9
3,012,910 - PS417_13690 0.52 -0.4
3,012,919 + PS417_13690 0.52 -0.0
3,012,921 + PS417_13690 0.52 -0.4
3,012,921 + PS417_13690 0.52 +0.2
3,012,922 - PS417_13690 0.53 +1.0
3,013,023 + PS417_13690 0.60 +0.1
3,013,023 + PS417_13690 0.60 +1.4
3,013,028 + PS417_13690 0.60 -0.6
3,013,028 + PS417_13690 0.60 +0.8
3,013,029 - PS417_13690 0.60 +0.0
3,013,619 + +1.2
3,013,619 + -0.4
3,013,619 + +0.1
3,013,632 + -0.5
3,013,633 - -0.1
3,013,633 - +0.1
3,013,633 - +0.2
3,013,673 + -1.1
3,013,677 + -1.0
3,013,677 + -0.8
3,013,677 + +0.5
3,013,677 + -0.1
3,013,677 + +0.1
3,013,677 + +0.1
3,013,678 - -0.1
3,013,678 - +1.0
3,013,678 - +0.0
3,013,678 - -0.2
3,013,678 - -0.0
3,013,812 + PS417_13695 0.10 -0.1
3,013,813 - PS417_13695 0.10 -0.2
3,013,813 - PS417_13695 0.10 -0.0
3,013,918 + +0.7
3,013,920 + PS417_13695 0.18 +0.2
3,013,920 + PS417_13695 0.18 +0.3
3,013,920 + PS417_13695 0.18 -0.3
3,013,953 + PS417_13695 0.21 +0.3
3,013,953 + PS417_13695 0.21 -0.7
3,013,954 - PS417_13695 0.21 -0.4
3,013,954 - PS417_13695 0.21 -0.1
3,014,088 + +0.9
3,014,157 + PS417_13695 0.36 -0.2
3,014,294 - PS417_13695 0.47 +0.5
3,014,294 - PS417_13695 0.47 -0.4
3,014,294 - PS417_13695 0.47 -1.7
3,014,295 + PS417_13695 0.47 +0.2
3,014,295 + PS417_13695 0.47 -0.4
3,014,295 + PS417_13695 0.47 -0.6
3,014,295 + PS417_13695 0.47 +0.3
3,014,295 + PS417_13695 0.47 -0.1
3,014,296 - PS417_13695 0.47 +0.3
3,014,296 - PS417_13695 0.47 +0.4
3,014,298 + PS417_13695 0.47 -0.1
3,014,298 + PS417_13695 0.47 -0.2
3,014,299 - PS417_13695 0.47 -0.1
3,014,331 + PS417_13695 0.50 +0.3
3,014,331 + PS417_13695 0.50 -0.7
3,014,364 + PS417_13695 0.52 +0.4
3,014,364 + PS417_13695 0.52 +0.7
3,014,418 + PS417_13695 0.56 -0.2
3,014,418 + PS417_13695 0.56 -0.2
3,014,419 - +3.4
3,014,419 - PS417_13695 0.56 -0.2
3,014,419 - PS417_13695 0.56 +0.1
3,014,422 + PS417_13695 0.56 +0.2
3,014,740 - PS417_13695 0.80 -0.5
3,014,856 + PS417_13695 0.89 -0.2
3,014,859 + PS417_13695 0.89 -0.8
3,014,860 - PS417_13695 0.89 -0.1
3,014,860 - PS417_13695 0.89 +0.3
3,014,975 + -0.3
3,015,018 - +0.2
3,015,070 - +1.2
3,015,070 - +0.3
3,015,107 + +0.8
3,015,331 + +0.0
3,015,332 - -0.4
3,015,358 - +1.3
3,015,365 + +0.7
3,015,365 + +0.1
3,015,366 - +0.5
3,015,366 - +0.0
3,015,413 - +0.2
3,015,413 - -0.2
3,015,413 - -0.5
3,015,413 - -0.3
3,015,413 - +0.3
3,015,413 - +0.1
3,015,414 + -0.1
3,015,414 + +0.2
3,015,414 + -0.2
3,015,414 + +0.2
3,015,414 + -0.1
3,015,414 + +0.5
3,015,414 + -0.3
3,015,415 - +0.2
3,015,415 - -0.7
3,015,415 - -1.6
3,015,415 - -0.9
3,015,489 + PS417_13705 0.15 +0.6
3,015,490 - PS417_13705 0.15 -0.0
3,015,514 - PS417_13705 0.18 +0.2
3,015,514 - PS417_13705 0.18 -0.2
3,015,592 - PS417_13705 0.27 +0.3
3,015,592 - PS417_13705 0.27 +0.1
3,015,824 - PS417_13705 0.54 +0.4

Or see this region's nucleotide sequence