Strain Fitness in Pseudomonas simiae WCS417 around PS417_08975

Experiment: Fraxetin 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_08970 and PS417_08975 are separated by 178 nucleotidesPS417_08975 and PS417_08980 are separated by 11 nucleotidesPS417_08980 and PS417_08985 are separated by 249 nucleotides PS417_08970: PS417_08970 - chemotaxis protein, at 1,952,137 to 1,953,762 _08970 PS417_08975: PS417_08975 - 3-oxoacyl-ACP synthase, at 1,953,941 to 1,955,161 _08975 PS417_08980: PS417_08980 - 3-hydroxydecanoyl-ACP dehydratase, at 1,955,173 to 1,955,688 _08980 PS417_08985: PS417_08985 - histidine kinase, at 1,955,938 to 1,957,839 _08985 Position (kb) 1953 1954 1955 1956Strain fitness (log2 ratio) -1 0 1 2at 1953.241 kb on + strand, within PS417_08970at 1953.359 kb on + strand, within PS417_08970at 1953.483 kb on + strand, within PS417_08970at 1953.483 kb on + strand, within PS417_08970at 1953.761 kb on - strandat 1953.821 kb on + strandat 1953.822 kb on - strandat 1953.873 kb on + strandat 1953.873 kb on + strandat 1953.942 kb on + strandat 1953.943 kb on - strandat 1953.943 kb on - strandat 1953.943 kb on - strandat 1953.946 kb on + strandat 1955.726 kb on - strandat 1955.774 kb on - strandat 1955.774 kb on - strandat 1955.780 kb on - strandat 1955.780 kb on - strandat 1955.780 kb on - strandat 1955.785 kb on - strandat 1955.785 kb on - strandat 1955.818 kb on - strandat 1955.999 kb on + strandat 1956.000 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
remove
1,953,241 + PS417_08970 0.68 +0.1
1,953,359 + PS417_08970 0.75 -0.3
1,953,483 + PS417_08970 0.83 +0.3
1,953,483 + PS417_08970 0.83 -1.6
1,953,761 - -0.1
1,953,821 + -0.0
1,953,822 - -0.9
1,953,873 + -0.2
1,953,873 + -0.3
1,953,942 + +0.3
1,953,943 - -0.0
1,953,943 - -0.3
1,953,943 - -0.7
1,953,946 + -1.7
1,955,726 - -1.1
1,955,774 - -0.6
1,955,774 - -0.3
1,955,780 - +0.2
1,955,780 - +1.5
1,955,780 - -0.0
1,955,785 - +1.8
1,955,785 - +0.2
1,955,818 - -0.7
1,955,999 + -0.1
1,956,000 - +0.3

Or see this region's nucleotide sequence