Strain Fitness in Pseudomonas simiae WCS417 around PS417_07165

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07155 and PS417_07160 are separated by 10 nucleotidesPS417_07160 and PS417_07165 are separated by 273 nucleotidesPS417_07165 and PS417_07170 are separated by 17 nucleotides PS417_07155: PS417_07155 - peroxiredoxin, at 1,581,846 to 1,582,319 _07155 PS417_07160: PS417_07160 - glycine cleavage system protein R, at 1,582,330 to 1,582,890 _07160 PS417_07165: PS417_07165 - dihydrodipicolinate synthase, at 1,583,164 to 1,584,042 _07165 PS417_07170: PS417_07170 - hypothetical protein, at 1,584,060 to 1,585,175 _07170 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -2 -1 0 1 2at 1582.217 kb on - strand, within PS417_07155at 1582.217 kb on - strand, within PS417_07155at 1582.217 kb on - strandat 1582.217 kb on - strand, within PS417_07155at 1582.217 kb on - strand, within PS417_07155at 1582.217 kb on - strand, within PS417_07155at 1582.331 kb on + strandat 1582.331 kb on + strandat 1582.331 kb on + strandat 1582.331 kb on + strandat 1582.332 kb on - strandat 1582.332 kb on - strandat 1582.332 kb on - strandat 1582.493 kb on + strand, within PS417_07160at 1582.493 kb on + strand, within PS417_07160at 1582.589 kb on + strand, within PS417_07160at 1582.589 kb on + strand, within PS417_07160at 1582.589 kb on + strand, within PS417_07160at 1582.589 kb on + strand, within PS417_07160at 1582.589 kb on + strand, within PS417_07160at 1582.589 kb on + strand, within PS417_07160at 1582.590 kb on - strand, within PS417_07160at 1582.590 kb on - strand, within PS417_07160at 1582.590 kb on - strand, within PS417_07160at 1582.590 kb on - strand, within PS417_07160at 1582.594 kb on + strand, within PS417_07160at 1582.594 kb on + strand, within PS417_07160at 1582.594 kb on + strand, within PS417_07160at 1582.599 kb on - strand, within PS417_07160at 1582.599 kb on - strand, within PS417_07160at 1582.599 kb on - strand, within PS417_07160at 1582.599 kb on - strand, within PS417_07160at 1582.901 kb on + strandat 1583.126 kb on + strandat 1583.127 kb on - strandat 1583.178 kb on + strandat 1583.482 kb on + strand, within PS417_07165at 1583.509 kb on + strand, within PS417_07165at 1583.509 kb on + strand, within PS417_07165at 1583.560 kb on + strand, within PS417_07165at 1583.909 kb on + strand, within PS417_07165at 1583.910 kb on + strand, within PS417_07165at 1584.185 kb on + strand, within PS417_07170at 1584.288 kb on + strand, within PS417_07170at 1584.545 kb on - strand, within PS417_07170at 1584.599 kb on + strand, within PS417_07170at 1584.615 kb on + strand, within PS417_07170at 1584.781 kb on - strand, within PS417_07170at 1584.908 kb on - strand, within PS417_07170at 1584.908 kb on - strand, within PS417_07170at 1584.937 kb on - strand, within PS417_07170at 1584.940 kb on - strand, within PS417_07170

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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1,582,217 - PS417_07155 0.78 +1.6
1,582,217 - PS417_07155 0.78 +0.4
1,582,217 - +2.2
1,582,217 - PS417_07155 0.78 +0.3
1,582,217 - PS417_07155 0.78 +1.0
1,582,217 - PS417_07155 0.78 +0.2
1,582,331 + +0.3
1,582,331 + +0.3
1,582,331 + +0.6
1,582,331 + -0.9
1,582,332 - -0.4
1,582,332 - -0.0
1,582,332 - -0.1
1,582,493 + PS417_07160 0.29 +0.3
1,582,493 + PS417_07160 0.29 +0.1
1,582,589 + PS417_07160 0.46 +1.0
1,582,589 + PS417_07160 0.46 -0.6
1,582,589 + PS417_07160 0.46 +0.6
1,582,589 + PS417_07160 0.46 -0.2
1,582,589 + PS417_07160 0.46 -0.2
1,582,589 + PS417_07160 0.46 -0.3
1,582,590 - PS417_07160 0.46 -0.9
1,582,590 - PS417_07160 0.46 -0.0
1,582,590 - PS417_07160 0.46 +2.5
1,582,590 - PS417_07160 0.46 +0.1
1,582,594 + PS417_07160 0.47 +1.2
1,582,594 + PS417_07160 0.47 +0.5
1,582,594 + PS417_07160 0.47 +0.0
1,582,599 - PS417_07160 0.48 -0.1
1,582,599 - PS417_07160 0.48 +0.6
1,582,599 - PS417_07160 0.48 -1.0
1,582,599 - PS417_07160 0.48 +0.3
1,582,901 + -0.0
1,583,126 + -1.4
1,583,127 - -1.8
1,583,178 + -1.7
1,583,482 + PS417_07165 0.36 -1.6
1,583,509 + PS417_07165 0.39 -0.3
1,583,509 + PS417_07165 0.39 -0.1
1,583,560 + PS417_07165 0.45 +1.1
1,583,909 + PS417_07165 0.85 -0.4
1,583,910 + PS417_07165 0.85 -0.8
1,584,185 + PS417_07170 0.11 -0.2
1,584,288 + PS417_07170 0.20 -0.2
1,584,545 - PS417_07170 0.43 -2.1
1,584,599 + PS417_07170 0.48 -0.8
1,584,615 + PS417_07170 0.50 -1.4
1,584,781 - PS417_07170 0.65 -2.2
1,584,908 - PS417_07170 0.76 -0.2
1,584,908 - PS417_07170 0.76 +0.2
1,584,937 - PS417_07170 0.79 -1.4
1,584,940 - PS417_07170 0.79 -0.8

Or see this region's nucleotide sequence