Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00660 and PS417_00665 overlap by 4 nucleotides PS417_00665 and PS417_00670 are separated by 74 nucleotides PS417_00670 and PS417_00675 overlap by 4 nucleotides
PS417_00660: PS417_00660 - DSBA oxidoreductase, at 135,246 to 136,304
_00660
PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746
_00665
PS417_00670: PS417_00670 - RNA polymerase sigma factor, at 137,821 to 138,330
_00670
PS417_00675: PS417_00675 - iron dicitrate transport regulator FecR, at 138,327 to 139,277
_00675
Position (kb) 136
137
138 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 135.309 kb on + strand at 135.310 kb on - strand at 135.310 kb on - strand at 135.518 kb on + strand, within PS417_00660 at 135.870 kb on + strand, within PS417_00660 at 135.871 kb on - strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.984 kb on + strand, within PS417_00660 at 135.985 kb on - strand, within PS417_00660 at 136.023 kb on - strand, within PS417_00660 at 136.292 kb on - strand at 136.502 kb on - strand, within PS417_00665 at 136.502 kb on - strand, within PS417_00665 at 136.625 kb on + strand, within PS417_00665 at 136.626 kb on - strand, within PS417_00665 at 136.848 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 137.000 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.487 kb on - strand, within PS417_00665 at 137.570 kb on + strand, within PS417_00665 at 137.571 kb on - strand, within PS417_00665 at 137.687 kb on + strand at 137.688 kb on - strand at 137.864 kb on - strand at 138.004 kb on + strand, within PS417_00670 at 138.070 kb on + strand, within PS417_00670 at 138.071 kb on - strand, within PS417_00670 at 138.204 kb on - strand, within PS417_00670 at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.616 kb on - strand, within PS417_00675
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 135,309 + -4.4 135,310 - -5.0 135,310 - -0.2 135,518 + PS417_00660 0.26 -0.2 135,870 + PS417_00660 0.59 -1.8 135,871 - PS417_00660 0.59 -2.7 135,933 + PS417_00660 0.65 -3.5 135,933 + PS417_00660 0.65 -1.8 135,984 + PS417_00660 0.70 -1.6 135,985 - PS417_00660 0.70 -2.5 136,023 - PS417_00660 0.73 -2.8 136,292 - -4.7 136,502 - PS417_00665 0.14 -4.4 136,502 - PS417_00665 0.14 -5.4 136,625 + PS417_00665 0.22 -4.2 136,626 - PS417_00665 0.22 -4.5 136,848 - PS417_00665 0.38 -4.9 136,867 - PS417_00665 0.39 -3.5 136,867 - PS417_00665 0.39 +0.5 137,000 - PS417_00665 0.48 -3.4 137,433 - PS417_00665 0.78 -3.5 137,433 - PS417_00665 0.78 +0.6 137,433 - PS417_00665 0.78 -3.6 137,487 - PS417_00665 0.82 -1.1 137,570 + PS417_00665 0.88 -3.6 137,571 - PS417_00665 0.88 -4.9 137,687 + -2.0 137,688 - -1.7 137,864 - -1.3 138,004 + PS417_00670 0.36 -0.4 138,070 + PS417_00670 0.49 -0.1 138,071 - PS417_00670 0.49 -1.1 138,204 - PS417_00670 0.75 +0.8 138,280 + -0.7 138,280 + +0.4 138,280 + -0.0 138,280 + +1.6 138,280 + -0.1 138,281 - -1.1 138,281 - -1.5 138,281 - -0.3 138,616 - PS417_00675 0.30 -0.2
Or see this region's nucleotide sequence