Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06090 and PS417_06095 are separated by 3 nucleotides PS417_06095 and PS417_06100 are separated by 96 nucleotides PS417_06100 and PS417_06105 are separated by 190 nucleotides PS417_06105 and PS417_06110 are separated by 93 nucleotides
PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840
_06090
PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464
_06095
PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343
_06100
PS417_06105: PS417_06105 - TetR family transcriptional regulator, at 1,352,534 to 1,353,169
_06105
PS417_06110: PS417_06110 - RND transporter, at 1,353,263 to 1,354,363
_06110
Position (kb) 1351
1352
1353 Strain fitness (log2 ratio) -1
0
1
2 at 1350.582 kb on + strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.778 kb on + strand at 1351.398 kb on + strand, within PS417_06095 at 1351.399 kb on - strand, within PS417_06095 at 1351.432 kb on + strand at 1351.433 kb on - strand at 1351.496 kb on + strand at 1351.537 kb on + strand at 1351.541 kb on - strand at 1352.090 kb on - strand, within PS417_06100 at 1352.317 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.385 kb on + strand at 1352.386 kb on - strand at 1352.554 kb on + strand at 1352.555 kb on - strand at 1352.622 kb on + strand, within PS417_06105 at 1352.623 kb on - strand, within PS417_06105 at 1352.623 kb on - strand, within PS417_06105 at 1352.623 kb on - strand, within PS417_06105 at 1352.879 kb on - strand, within PS417_06105 at 1352.925 kb on + strand, within PS417_06105 at 1352.925 kb on + strand, within PS417_06105 at 1352.926 kb on - strand, within PS417_06105 at 1352.926 kb on - strand, within PS417_06105 at 1353.055 kb on + strand, within PS417_06105 at 1353.179 kb on + strand at 1353.205 kb on + strand at 1353.214 kb on - strand at 1353.223 kb on + strand at 1353.235 kb on + strand at 1353.271 kb on + strand at 1353.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 1,350,582 + PS417_06090 0.62 +0.6 1,350,583 - PS417_06090 0.62 -0.5 1,350,583 - PS417_06090 0.62 -0.3 1,350,583 - -0.2 1,350,586 + PS417_06090 0.62 -0.2 1,350,586 + PS417_06090 0.62 +0.3 1,350,586 + PS417_06090 0.62 +0.2 1,350,586 + PS417_06090 0.62 +1.4 1,350,586 + PS417_06090 0.62 +2.2 1,350,587 - PS417_06090 0.62 -0.1 1,350,587 - PS417_06090 0.62 -0.1 1,350,587 - PS417_06090 0.62 -0.1 1,350,587 - PS417_06090 0.62 +0.6 1,350,587 - PS417_06090 0.62 -0.0 1,350,587 - PS417_06090 0.62 -0.2 1,350,587 - PS417_06090 0.62 -0.2 1,350,587 - PS417_06090 0.62 -0.2 1,350,587 - PS417_06090 0.62 +0.9 1,350,778 + +0.0 1,351,398 + PS417_06095 0.89 +0.0 1,351,399 - PS417_06095 0.89 -0.9 1,351,432 + +0.5 1,351,433 - -0.1 1,351,496 + +0.2 1,351,537 + -0.0 1,351,541 - +0.1 1,352,090 - PS417_06100 0.68 -1.0 1,352,317 + -0.3 1,352,377 + -0.0 1,352,377 + -0.6 1,352,377 + -0.6 1,352,377 + +1.2 1,352,377 + -0.2 1,352,378 - +0.4 1,352,378 - -0.4 1,352,378 - -0.4 1,352,378 - -0.7 1,352,378 - +0.2 1,352,378 - -0.0 1,352,378 - -0.3 1,352,385 + -0.8 1,352,386 - -0.9 1,352,554 + +0.5 1,352,555 - -0.0 1,352,622 + PS417_06105 0.14 +0.6 1,352,623 - PS417_06105 0.14 -0.0 1,352,623 - PS417_06105 0.14 +0.1 1,352,623 - PS417_06105 0.14 -0.1 1,352,879 - PS417_06105 0.54 +1.0 1,352,925 + PS417_06105 0.61 -0.2 1,352,925 + PS417_06105 0.61 -0.5 1,352,926 - PS417_06105 0.62 -0.1 1,352,926 - PS417_06105 0.62 -0.1 1,353,055 + PS417_06105 0.82 +0.1 1,353,179 + +2.2 1,353,205 + -0.4 1,353,214 - -0.0 1,353,223 + -0.1 1,353,235 + -0.8 1,353,271 + +0.1 1,353,272 - +0.4
Or see this region's nucleotide sequence