Strain Fitness in Pseudomonas simiae WCS417 around PS417_03990

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03985 and PS417_03990 are separated by 136 nucleotidesPS417_03990 and PS417_03995 are separated by 204 nucleotidesPS417_03995 and PS417_04000 are separated by 2 nucleotides PS417_03985: PS417_03985 - flavodoxin, at 892,714 to 895,239 _03985 PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661 _03990 PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546 _03995 PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301 _04000 Position (kb) 895 896 897 898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 894.401 kb on + strand, within PS417_03985at 894.404 kb on + strand, within PS417_03985at 894.405 kb on - strand, within PS417_03985at 894.449 kb on + strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.480 kb on - strand, within PS417_03985at 894.483 kb on + strand, within PS417_03985at 894.503 kb on + strand, within PS417_03985at 894.503 kb on + strandat 894.504 kb on - strand, within PS417_03985at 894.602 kb on + strand, within PS417_03985at 894.602 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.693 kb on + strand, within PS417_03985at 894.694 kb on - strand, within PS417_03985at 894.908 kb on + strand, within PS417_03985at 894.908 kb on + strand, within PS417_03985at 894.909 kb on - strand, within PS417_03985at 894.909 kb on - strand, within PS417_03985at 894.920 kb on + strand, within PS417_03985at 895.106 kb on - strandat 895.265 kb on - strandat 895.268 kb on + strandat 895.268 kb on + strandat 895.269 kb on - strandat 895.269 kb on - strandat 895.367 kb on + strandat 895.367 kb on + strandat 895.367 kb on + strandat 895.377 kb on + strandat 895.378 kb on - strandat 895.408 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.458 kb on + strandat 895.518 kb on + strandat 895.545 kb on + strandat 895.546 kb on - strandat 895.554 kb on - strandat 895.554 kb on - strandat 895.557 kb on + strandat 895.557 kb on + strandat 895.558 kb on - strandat 895.638 kb on + strand, within PS417_03990at 895.638 kb on + strand, within PS417_03990at 895.761 kb on + strand, within PS417_03990at 895.762 kb on - strand, within PS417_03990at 895.854 kb on + strand, within PS417_03990at 895.854 kb on + strand, within PS417_03990at 896.074 kb on - strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.082 kb on + strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.083 kb on - strand, within PS417_03990at 896.265 kb on + strand, within PS417_03990at 896.266 kb on - strand, within PS417_03990at 896.266 kb on - strand, within PS417_03990at 896.266 kb on - strand, within PS417_03990at 896.304 kb on + strand, within PS417_03990at 896.304 kb on + strand, within PS417_03990at 896.304 kb on + strand, within PS417_03990at 896.427 kb on + strand, within PS417_03990at 896.427 kb on + strand, within PS417_03990at 896.427 kb on + strand, within PS417_03990at 896.476 kb on - strand, within PS417_03990at 896.476 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.629 kb on - strand, within PS417_03990at 896.871 kb on + strand, within PS417_03990at 896.874 kb on + strand, within PS417_03990at 896.874 kb on + strand, within PS417_03990at 896.874 kb on + strand, within PS417_03990at 896.875 kb on - strand, within PS417_03990at 896.875 kb on - strand, within PS417_03990at 896.943 kb on + strand, within PS417_03990at 897.246 kb on + strand, within PS417_03990at 897.246 kb on + strand, within PS417_03990at 897.468 kb on + strandat 897.639 kb on - strandat 897.698 kb on + strandat 898.075 kb on + strand, within PS417_03995at 898.075 kb on + strand, within PS417_03995at 898.075 kb on + strand, within PS417_03995at 898.125 kb on - strand, within PS417_03995at 898.125 kb on - strand, within PS417_03995at 898.374 kb on - strand, within PS417_03995at 898.511 kb on + strandat 898.512 kb on - strandat 898.512 kb on - strandat 898.559 kb on + strandat 898.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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894,401 + PS417_03985 0.67 -0.4
894,404 + PS417_03985 0.67 -1.7
894,405 - PS417_03985 0.67 -1.0
894,449 + PS417_03985 0.69 +1.6
894,480 - PS417_03985 0.70 -1.5
894,480 - PS417_03985 0.70 -1.7
894,480 - PS417_03985 0.70 -1.0
894,483 + PS417_03985 0.70 -2.0
894,503 + PS417_03985 0.71 -0.4
894,503 + -0.4
894,504 - PS417_03985 0.71 -1.3
894,602 + PS417_03985 0.75 -1.0
894,602 + PS417_03985 0.75 -3.2
894,693 + PS417_03985 0.78 -0.4
894,693 + PS417_03985 0.78 -1.2
894,693 + PS417_03985 0.78 -1.2
894,694 - PS417_03985 0.78 -3.1
894,908 + PS417_03985 0.87 -1.4
894,908 + PS417_03985 0.87 -1.0
894,909 - PS417_03985 0.87 -1.9
894,909 - PS417_03985 0.87 -1.2
894,920 + PS417_03985 0.87 -0.5
895,106 - -1.5
895,265 - +0.0
895,268 + -0.4
895,268 + -2.0
895,269 - +0.2
895,269 - -0.3
895,367 + -0.8
895,367 + -0.3
895,367 + -1.7
895,377 + -0.2
895,378 - +1.2
895,408 + -4.3
895,458 + -0.1
895,458 + -1.0
895,458 + -1.2
895,458 + -2.4
895,518 + -1.5
895,545 + -3.0
895,546 - -0.9
895,554 - -2.0
895,554 - -2.0
895,557 + -3.4
895,557 + -3.6
895,558 - -2.9
895,638 + PS417_03990 0.11 -1.5
895,638 + PS417_03990 0.11 -1.6
895,761 + PS417_03990 0.17 -2.4
895,762 - PS417_03990 0.17 -1.0
895,854 + PS417_03990 0.21 -2.0
895,854 + PS417_03990 0.21 -3.2
896,074 - PS417_03990 0.31 -1.7
896,082 + PS417_03990 0.31 -2.4
896,082 + PS417_03990 0.31 -0.0
896,082 + PS417_03990 0.31 -3.6
896,082 + PS417_03990 0.31 -2.2
896,082 + PS417_03990 0.31 -1.2
896,082 + PS417_03990 0.31 -1.2
896,083 - PS417_03990 0.31 -0.5
896,083 - PS417_03990 0.31 -2.1
896,083 - PS417_03990 0.31 -2.6
896,083 - PS417_03990 0.31 -2.7
896,265 + PS417_03990 0.39 -1.8
896,266 - PS417_03990 0.39 +0.2
896,266 - PS417_03990 0.39 -1.3
896,266 - PS417_03990 0.39 -2.5
896,304 + PS417_03990 0.41 -1.0
896,304 + PS417_03990 0.41 -1.5
896,304 + PS417_03990 0.41 -0.7
896,427 + PS417_03990 0.46 -2.4
896,427 + PS417_03990 0.46 -2.1
896,427 + PS417_03990 0.46 -2.7
896,476 - PS417_03990 0.48 -0.3
896,476 - PS417_03990 0.48 -1.1
896,629 - PS417_03990 0.55 -1.6
896,629 - PS417_03990 0.55 -1.5
896,629 - PS417_03990 0.55 -1.3
896,629 - PS417_03990 0.55 -2.4
896,871 + PS417_03990 0.65 -2.8
896,874 + PS417_03990 0.66 -2.0
896,874 + PS417_03990 0.66 -2.6
896,874 + PS417_03990 0.66 -2.2
896,875 - PS417_03990 0.66 -2.4
896,875 - PS417_03990 0.66 -2.4
896,943 + PS417_03990 0.69 -1.1
897,246 + PS417_03990 0.82 -1.1
897,246 + PS417_03990 0.82 -2.8
897,468 + -2.4
897,639 - -3.0
897,698 + -1.8
898,075 + PS417_03995 0.31 -4.7
898,075 + PS417_03995 0.31 -1.0
898,075 + PS417_03995 0.31 -1.9
898,125 - PS417_03995 0.38 -1.6
898,125 - PS417_03995 0.38 -1.7
898,374 - PS417_03995 0.75 -2.2
898,511 + -2.7
898,512 - -0.6
898,512 - -1.7
898,559 + -1.2
898,560 - -0.4

Or see this region's nucleotide sequence