Strain Fitness in Pseudomonas simiae WCS417 around PS417_02530

Experiment: Fraxetin 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02525 and PS417_02530 overlap by 1 nucleotidesPS417_02530 and PS417_02535 are separated by 144 nucleotidesPS417_02535 and PS417_02540 are separated by 152 nucleotidesPS417_02540 and PS417_02545 are separated by 152 nucleotidesPS417_02545 and PS417_02550 are separated by 152 nucleotides PS417_02525: PS417_02525 - iron ABC transporter permease, at 578,188 to 579,753 _02525 PS417_02530: PS417_02530 - iron ABC transporter substrate-binding protein, at 579,753 to 580,778 _02530 PS417_02535: PS417_02535 - tRNA-Leu, at 580,923 to 581,009 _02535 PS417_02540: PS417_02540 - tRNA-Leu, at 581,162 to 581,248 _02540 PS417_02545: PS417_02545 - tRNA-Leu, at 581,401 to 581,487 _02545 PS417_02550: PS417_02550 - tRNA-Leu, at 581,640 to 581,726 _02550 Position (kb) 579 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1at 578.831 kb on - strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 579.010 kb on + strand, within PS417_02525at 579.010 kb on + strand, within PS417_02525at 579.093 kb on - strand, within PS417_02525at 579.093 kb on - strand, within PS417_02525at 579.105 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.170 kb on - strand, within PS417_02525at 579.566 kb on + strand, within PS417_02525at 579.586 kb on + strand, within PS417_02525at 579.629 kb on + strandat 579.629 kb on + strandat 580.039 kb on + strand, within PS417_02530at 580.039 kb on + strand, within PS417_02530at 580.039 kb on + strand, within PS417_02530at 580.040 kb on - strand, within PS417_02530at 580.090 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.094 kb on - strand, within PS417_02530at 580.162 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.426 kb on - strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.507 kb on + strand, within PS417_02530at 580.581 kb on + strand, within PS417_02530at 580.581 kb on + strand, within PS417_02530at 580.582 kb on - strand, within PS417_02530at 580.582 kb on - strand, within PS417_02530at 580.658 kb on - strand, within PS417_02530at 580.687 kb on + strandat 581.765 kb on - strandat 581.767 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
remove
578,831 - PS417_02525 0.41 -3.2
578,831 - PS417_02525 0.41 -0.9
578,831 - PS417_02525 0.41 -2.0
578,897 + PS417_02525 0.45 -1.6
578,897 + PS417_02525 0.45 -1.5
578,897 + PS417_02525 0.45 -0.8
579,010 + PS417_02525 0.52 -2.3
579,010 + PS417_02525 0.52 -0.8
579,093 - PS417_02525 0.58 -1.5
579,093 - PS417_02525 0.58 -2.5
579,105 + PS417_02525 0.59 -1.8
579,153 + PS417_02525 0.62 -1.2
579,153 + PS417_02525 0.62 -1.1
579,153 + PS417_02525 0.62 -0.2
579,154 - PS417_02525 0.62 -1.1
579,154 - PS417_02525 0.62 -1.8
579,154 - PS417_02525 0.62 -0.9
579,170 - PS417_02525 0.63 -2.3
579,566 + PS417_02525 0.88 -1.2
579,586 + PS417_02525 0.89 -2.9
579,629 + -1.7
579,629 + -1.1
580,039 + PS417_02530 0.28 -1.7
580,039 + PS417_02530 0.28 +0.6
580,039 + PS417_02530 0.28 -0.1
580,040 - PS417_02530 0.28 -0.2
580,090 + PS417_02530 0.33 -1.2
580,093 + PS417_02530 0.33 -0.3
580,093 + PS417_02530 0.33 -0.8
580,093 + PS417_02530 0.33 -1.0
580,094 - PS417_02530 0.33 -1.5
580,162 + PS417_02530 0.40 -1.1
580,414 + PS417_02530 0.64 -1.2
580,414 + PS417_02530 0.64 -0.1
580,414 + PS417_02530 0.64 -1.4
580,426 - PS417_02530 0.66 -2.5
580,428 + PS417_02530 0.66 -0.8
580,428 + PS417_02530 0.66 -0.3
580,428 + PS417_02530 0.66 -1.4
580,428 + PS417_02530 0.66 -0.9
580,429 - PS417_02530 0.66 -1.9
580,429 - PS417_02530 0.66 -0.3
580,429 - PS417_02530 0.66 -1.3
580,507 + PS417_02530 0.73 -1.0
580,581 + PS417_02530 0.81 -2.7
580,581 + PS417_02530 0.81 -1.3
580,582 - PS417_02530 0.81 -0.6
580,582 - PS417_02530 0.81 -1.5
580,658 - PS417_02530 0.88 +0.2
580,687 + -1.3
581,765 - +1.0
581,767 - -0.8

Or see this region's nucleotide sequence