Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20030 and PS417_20035 overlap by 4 nucleotides PS417_20035 and PS417_20040 are separated by 91 nucleotides PS417_20040 and PS417_20045 overlap by 4 nucleotides PS417_20045 and PS417_20050 overlap by 8 nucleotides
PS417_20030: PS417_20030 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,347,322 to 4,348,377
_20030
PS417_20035: PS417_20035 - adenosylcobinamide kinase, at 4,348,374 to 4,348,895
_20035
PS417_20040: PS417_20040 - cobyric acid synthase, at 4,348,987 to 4,350,438
_20040
PS417_20045: PS417_20045 - threonine-phosphate decarboxylase, at 4,350,435 to 4,351,424
_20045
PS417_20050: PS417_20050 - cobalamin biosynthesis protein CobD, at 4,351,417 to 4,352,325
_20050
Position (kb)
4348
4349
4350
4351 Strain fitness (log2 ratio)
-1
0
1 at 4348.807 kb on + strand, within PS417_20035 at 4348.807 kb on + strand, within PS417_20035 at 4348.807 kb on + strand, within PS417_20035 at 4348.807 kb on + strand, within PS417_20035 at 4348.807 kb on + strand, within PS417_20035 at 4348.808 kb on - strand, within PS417_20035 at 4348.808 kb on - strand, within PS417_20035 at 4348.808 kb on - strand, within PS417_20035 at 4348.808 kb on - strand, within PS417_20035 at 4348.978 kb on + strand at 4349.165 kb on + strand, within PS417_20040 at 4349.165 kb on + strand, within PS417_20040 at 4349.166 kb on - strand, within PS417_20040 at 4349.526 kb on - strand, within PS417_20040 at 4349.526 kb on - strand, within PS417_20040 at 4349.542 kb on + strand, within PS417_20040 at 4349.766 kb on - strand, within PS417_20040 at 4349.863 kb on - strand, within PS417_20040 at 4350.066 kb on - strand, within PS417_20040 at 4350.440 kb on + strand at 4350.441 kb on - strand at 4350.441 kb on - strand at 4350.449 kb on + strand at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.727 kb on - strand, within PS417_20045 at 4350.727 kb on - strand, within PS417_20045 at 4350.727 kb on - strand, within PS417_20045 at 4350.940 kb on - strand, within PS417_20045 at 4351.044 kb on + strand, within PS417_20045 at 4351.139 kb on - strand, within PS417_20045 at 4351.241 kb on - strand, within PS417_20045 at 4351.243 kb on + strand, within PS417_20045 at 4351.424 kb on + strand at 4351.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 4,348,807 + PS417_20035 0.83 +0.4 4,348,807 + PS417_20035 0.83 +0.2 4,348,807 + PS417_20035 0.83 -0.1 4,348,807 + PS417_20035 0.83 -0.2 4,348,807 + PS417_20035 0.83 -0.3 4,348,808 - PS417_20035 0.83 +0.2 4,348,808 - PS417_20035 0.83 +0.1 4,348,808 - PS417_20035 0.83 -0.3 4,348,808 - PS417_20035 0.83 +0.2 4,348,978 + -1.2 4,349,165 + PS417_20040 0.12 -0.3 4,349,165 + PS417_20040 0.12 -0.7 4,349,166 - PS417_20040 0.12 -1.1 4,349,526 - PS417_20040 0.37 +0.7 4,349,526 - PS417_20040 0.37 +1.2 4,349,542 + PS417_20040 0.38 -0.4 4,349,766 - PS417_20040 0.54 +1.0 4,349,863 - PS417_20040 0.60 +1.1 4,350,066 - PS417_20040 0.74 +0.3 4,350,440 + -0.6 4,350,441 - +0.3 4,350,441 - +0.5 4,350,449 + +0.4 4,350,726 + PS417_20045 0.29 -0.3 4,350,726 + PS417_20045 0.29 +0.2 4,350,726 + PS417_20045 0.29 +1.0 4,350,726 + PS417_20045 0.29 -0.9 4,350,726 + PS417_20045 0.29 -0.2 4,350,727 - PS417_20045 0.29 -0.4 4,350,727 - PS417_20045 0.29 -0.3 4,350,727 - PS417_20045 0.29 +0.7 4,350,940 - PS417_20045 0.51 -0.4 4,351,044 + PS417_20045 0.62 -0.2 4,351,139 - PS417_20045 0.71 -0.6 4,351,241 - PS417_20045 0.81 -0.1 4,351,243 + PS417_20045 0.82 -0.9 4,351,424 + -0.1 4,351,425 - +0.8
Or see this region's nucleotide sequence