Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12000 and PS417_12005 overlap by 4 nucleotides PS417_12005 and PS417_12010 are separated by 56 nucleotides PS417_12010 and PS417_12015 are separated by 56 nucleotides PS417_12015 and PS417_12020 are separated by 193 nucleotides
PS417_12000: PS417_12000 - hypothetical protein, at 2,608,578 to 2,609,009
_12000
PS417_12005: PS417_12005 - hypothetical protein, at 2,609,006 to 2,609,494
_12005
PS417_12010: PS417_12010 - SCP-2 family sterol carrier protein, at 2,609,551 to 2,609,865
_12010
PS417_12015: PS417_12015 - phosphoglycerate mutase, at 2,609,922 to 2,610,632
_12015
PS417_12020: PS417_12020 - peptidase, at 2,610,826 to 2,611,851
_12020
Position (kb)
2609
2610
2611 Strain fitness (log2 ratio)
-1
0
1 at 2609.167 kb on - strand, within PS417_12005 at 2609.210 kb on - strand, within PS417_12005 at 2609.210 kb on - strand, within PS417_12005 at 2609.432 kb on + strand, within PS417_12005 at 2609.493 kb on - strand at 2609.842 kb on + strand at 2609.884 kb on + strand at 2610.229 kb on + strand, within PS417_12015 at 2610.230 kb on - strand, within PS417_12015 at 2610.270 kb on - strand, within PS417_12015 at 2610.619 kb on + strand at 2610.705 kb on - strand at 2610.716 kb on - strand at 2610.845 kb on - strand at 2610.885 kb on + strand at 2610.979 kb on + strand, within PS417_12020 at 2610.979 kb on + strand, within PS417_12020 at 2610.980 kb on - strand, within PS417_12020 at 2611.484 kb on - strand, within PS417_12020
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 2,609,167 - PS417_12005 0.33 -0.7 2,609,210 - PS417_12005 0.42 -1.7 2,609,210 - PS417_12005 0.42 -1.3 2,609,432 + PS417_12005 0.87 -1.7 2,609,493 - -0.4 2,609,842 + -0.9 2,609,884 + -0.3 2,610,229 + PS417_12015 0.43 +0.5 2,610,230 - PS417_12015 0.43 +0.4 2,610,270 - PS417_12015 0.49 -0.2 2,610,619 + +0.0 2,610,705 - -0.1 2,610,716 - +0.1 2,610,845 - +0.3 2,610,885 + -0.4 2,610,979 + PS417_12020 0.15 +0.5 2,610,979 + PS417_12020 0.15 +1.5 2,610,980 - PS417_12020 0.15 -0.2 2,611,484 - PS417_12020 0.64 -1.2
Or see this region's nucleotide sequence