Strain Fitness in Pseudomonas simiae WCS417 around PS417_12015

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12000 and PS417_12005 overlap by 4 nucleotidesPS417_12005 and PS417_12010 are separated by 56 nucleotidesPS417_12010 and PS417_12015 are separated by 56 nucleotidesPS417_12015 and PS417_12020 are separated by 193 nucleotides PS417_12000: PS417_12000 - hypothetical protein, at 2,608,578 to 2,609,009 _12000 PS417_12005: PS417_12005 - hypothetical protein, at 2,609,006 to 2,609,494 _12005 PS417_12010: PS417_12010 - SCP-2 family sterol carrier protein, at 2,609,551 to 2,609,865 _12010 PS417_12015: PS417_12015 - phosphoglycerate mutase, at 2,609,922 to 2,610,632 _12015 PS417_12020: PS417_12020 - peptidase, at 2,610,826 to 2,611,851 _12020 Position (kb) 2609 2610 2611Strain fitness (log2 ratio) -1 0 1at 2609.167 kb on - strand, within PS417_12005at 2609.210 kb on - strand, within PS417_12005at 2609.210 kb on - strand, within PS417_12005at 2609.432 kb on + strand, within PS417_12005at 2609.493 kb on - strandat 2609.842 kb on + strandat 2609.884 kb on + strandat 2610.229 kb on + strand, within PS417_12015at 2610.230 kb on - strand, within PS417_12015at 2610.270 kb on - strand, within PS417_12015at 2610.619 kb on + strandat 2610.705 kb on - strandat 2610.716 kb on - strandat 2610.845 kb on - strandat 2610.885 kb on + strandat 2610.979 kb on + strand, within PS417_12020at 2610.979 kb on + strand, within PS417_12020at 2610.980 kb on - strand, within PS417_12020at 2611.484 kb on - strand, within PS417_12020

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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2,609,167 - PS417_12005 0.33 -0.7
2,609,210 - PS417_12005 0.42 -1.7
2,609,210 - PS417_12005 0.42 -1.3
2,609,432 + PS417_12005 0.87 -1.7
2,609,493 - -0.4
2,609,842 + -0.9
2,609,884 + -0.3
2,610,229 + PS417_12015 0.43 +0.5
2,610,230 - PS417_12015 0.43 +0.4
2,610,270 - PS417_12015 0.49 -0.2
2,610,619 + +0.0
2,610,705 - -0.1
2,610,716 - +0.1
2,610,845 - +0.3
2,610,885 + -0.4
2,610,979 + PS417_12020 0.15 +0.5
2,610,979 + PS417_12020 0.15 +1.5
2,610,980 - PS417_12020 0.15 -0.2
2,611,484 - PS417_12020 0.64 -1.2

Or see this region's nucleotide sequence