Strain Fitness in Pseudomonas simiae WCS417 around PS417_10640

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10630 and PS417_10635 are separated by 397 nucleotidesPS417_10635 and PS417_10640 are separated by 12 nucleotidesPS417_10640 and PS417_10645 are separated by 421 nucleotides PS417_10630: PS417_10630 - hydratase, at 2,268,160 to 2,269,047 _10630 PS417_10635: PS417_10635 - peptidylprolyl isomerase, at 2,269,445 to 2,269,789 _10635 PS417_10640: PS417_10640 - GNAT family acetyltransferase, at 2,269,802 to 2,270,404 _10640 PS417_10645: PS417_10645 - magnesium ABC transporter ATPase, at 2,270,826 to 2,273,531 _10645 Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2268.806 kb on - strand, within PS417_10630at 2268.882 kb on - strand, within PS417_10630at 2269.061 kb on + strandat 2269.061 kb on + strandat 2269.061 kb on + strandat 2269.061 kb on + strandat 2269.061 kb on + strandat 2269.062 kb on - strandat 2269.062 kb on - strandat 2269.067 kb on + strandat 2269.070 kb on - strandat 2269.094 kb on + strandat 2269.096 kb on + strandat 2269.096 kb on + strandat 2269.116 kb on - strandat 2269.116 kb on - strandat 2269.147 kb on + strandat 2269.148 kb on - strandat 2269.161 kb on + strandat 2269.161 kb on + strandat 2269.176 kb on + strandat 2269.177 kb on - strandat 2269.228 kb on + strandat 2269.231 kb on + strandat 2269.231 kb on + strandat 2269.231 kb on + strandat 2269.232 kb on - strandat 2269.317 kb on + strandat 2269.317 kb on + strandat 2269.529 kb on + strand, within PS417_10635at 2269.530 kb on - strand, within PS417_10635at 2269.665 kb on + strand, within PS417_10635at 2269.665 kb on + strand, within PS417_10635at 2269.666 kb on - strand, within PS417_10635at 2269.666 kb on - strand, within PS417_10635at 2269.669 kb on + strand, within PS417_10635at 2269.669 kb on + strand, within PS417_10635at 2269.669 kb on + strand, within PS417_10635at 2269.670 kb on - strand, within PS417_10635at 2269.916 kb on + strandat 2269.917 kb on - strand, within PS417_10640at 2270.012 kb on + strand, within PS417_10640at 2270.012 kb on + strand, within PS417_10640at 2270.013 kb on - strand, within PS417_10640at 2270.262 kb on - strand, within PS417_10640at 2270.271 kb on + strandat 2270.272 kb on - strand, within PS417_10640at 2270.360 kb on + strandat 2270.360 kb on + strandat 2270.360 kb on + strandat 2270.361 kb on - strandat 2270.361 kb on - strandat 2270.457 kb on - strandat 2270.477 kb on + strandat 2270.478 kb on - strandat 2270.520 kb on + strandat 2270.520 kb on + strandat 2270.538 kb on + strandat 2270.538 kb on + strandat 2270.539 kb on - strandat 2270.710 kb on + strandat 2270.758 kb on + strandat 2270.761 kb on - strandat 2271.072 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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2,268,806 - PS417_10630 0.73 -0.1
2,268,882 - PS417_10630 0.81 -0.5
2,269,061 + +0.4
2,269,061 + -1.9
2,269,061 + -0.4
2,269,061 + -1.1
2,269,061 + +0.8
2,269,062 - -0.6
2,269,062 - -0.1
2,269,067 + -0.1
2,269,070 - +1.9
2,269,094 + +1.9
2,269,096 + -0.4
2,269,096 + +0.1
2,269,116 - -0.2
2,269,116 - -0.3
2,269,147 + +0.9
2,269,148 - -0.3
2,269,161 + +0.7
2,269,161 + +0.6
2,269,176 + +0.2
2,269,177 - +0.2
2,269,228 + -0.1
2,269,231 + -0.4
2,269,231 + +0.3
2,269,231 + -0.3
2,269,232 - +0.9
2,269,317 + -0.4
2,269,317 + +0.9
2,269,529 + PS417_10635 0.24 -0.3
2,269,530 - PS417_10635 0.25 -0.1
2,269,665 + PS417_10635 0.64 -1.3
2,269,665 + PS417_10635 0.64 +0.4
2,269,666 - PS417_10635 0.64 +0.4
2,269,666 - PS417_10635 0.64 +0.3
2,269,669 + PS417_10635 0.65 +0.1
2,269,669 + PS417_10635 0.65 -1.3
2,269,669 + PS417_10635 0.65 +0.0
2,269,670 - PS417_10635 0.65 -0.3
2,269,916 + +0.4
2,269,917 - PS417_10640 0.19 +2.1
2,270,012 + PS417_10640 0.35 -1.6
2,270,012 + PS417_10640 0.35 -0.1
2,270,013 - PS417_10640 0.35 -1.1
2,270,262 - PS417_10640 0.76 +1.5
2,270,271 + -0.4
2,270,272 - PS417_10640 0.78 -0.0
2,270,360 + +0.4
2,270,360 + +0.3
2,270,360 + -0.5
2,270,361 - -0.4
2,270,361 - -1.0
2,270,457 - -2.6
2,270,477 + -2.8
2,270,478 - -2.5
2,270,520 + -0.2
2,270,520 + -4.0
2,270,538 + -3.3
2,270,538 + -0.4
2,270,539 - -1.9
2,270,710 + -3.1
2,270,758 + -1.0
2,270,761 - -1.5
2,271,072 + -2.7

Or see this region's nucleotide sequence