Strain Fitness in Pseudomonas simiae WCS417 around PS417_04115

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04105 and PS417_04110 are separated by 188 nucleotidesPS417_04110 and PS417_04115 are separated by 141 nucleotidesPS417_04115 and PS417_04120 are separated by 24 nucleotides PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520 _04105 PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146 _04110 PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923 _04115 PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303 _04120 Position (kb) 925 926Strain fitness (log2 ratio) -1 0 1at 924.338 kb on + strand, within PS417_04105at 924.338 kb on + strand, within PS417_04105at 924.338 kb on + strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.339 kb on - strand, within PS417_04105at 924.390 kb on - strandat 924.561 kb on + strandat 924.568 kb on + strandat 924.568 kb on + strandat 924.569 kb on - strandat 924.710 kb on + strandat 924.726 kb on - strandat 925.203 kb on - strandat 925.203 kb on - strandat 925.245 kb on - strandat 925.426 kb on - strand, within PS417_04115at 925.426 kb on - strand, within PS417_04115at 925.433 kb on + strand, within PS417_04115at 925.474 kb on - strand, within PS417_04115at 925.524 kb on + strand, within PS417_04115at 925.801 kb on + strand, within PS417_04115at 925.935 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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924,338 + PS417_04105 0.89 -0.5
924,338 + PS417_04105 0.89 +1.1
924,338 + PS417_04105 0.89 +0.9
924,339 - PS417_04105 0.89 -0.2
924,339 - PS417_04105 0.89 +0.1
924,339 - PS417_04105 0.89 -0.2
924,339 - PS417_04105 0.89 -0.1
924,339 - PS417_04105 0.89 -0.8
924,339 - PS417_04105 0.89 +1.1
924,339 - PS417_04105 0.89 +0.5
924,339 - PS417_04105 0.89 +0.1
924,390 - -0.9
924,561 + -0.1
924,568 + -0.3
924,568 + +0.2
924,569 - -0.9
924,710 + +1.0
924,726 - -0.8
925,203 - -1.3
925,203 - -0.5
925,245 - -0.5
925,426 - PS417_04115 0.22 -1.3
925,426 - PS417_04115 0.22 -1.2
925,433 + PS417_04115 0.23 -1.2
925,474 - PS417_04115 0.29 +0.7
925,524 + PS417_04115 0.37 -0.9
925,801 + PS417_04115 0.81 +0.3
925,935 + -1.4

Or see this region's nucleotide sequence