Strain Fitness in Pseudomonas simiae WCS417 around PS417_28080

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28075 and PS417_28080 are separated by 15 nucleotidesPS417_28080 and PS417_28085 are separated by 132 nucleotides PS417_28075: PS417_28075 - phosphate ABC transporter permease, at 6,057,413 to 6,059,083 _28075 PS417_28080: PS417_28080 - phosphate ABC transporter permease, at 6,059,099 to 6,061,384 _28080 PS417_28085: PS417_28085 - phosphate-binding protein, at 6,061,517 to 6,062,503 _28085 Position (kb) 6059 6060 6061 6062Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 6058.237 kb on - strand, within PS417_28075at 6058.564 kb on + strandat 6058.659 kb on + strand, within PS417_28075at 6058.891 kb on + strand, within PS417_28075at 6058.892 kb on - strand, within PS417_28075at 6058.917 kb on + strandat 6058.918 kb on - strandat 6059.091 kb on + strandat 6059.092 kb on - strandat 6059.100 kb on + strandat 6059.100 kb on + strandat 6059.502 kb on + strand, within PS417_28080at 6059.502 kb on + strand, within PS417_28080at 6059.502 kb on + strand, within PS417_28080at 6059.502 kb on + strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.565 kb on + strand, within PS417_28080at 6059.643 kb on + strand, within PS417_28080at 6059.644 kb on - strand, within PS417_28080at 6059.644 kb on - strand, within PS417_28080at 6059.938 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strandat 6060.073 kb on - strand, within PS417_28080at 6060.591 kb on + strand, within PS417_28080at 6060.591 kb on + strand, within PS417_28080at 6060.592 kb on - strand, within PS417_28080at 6060.592 kb on - strand, within PS417_28080at 6060.889 kb on + strand, within PS417_28080at 6060.889 kb on + strand, within PS417_28080at 6060.890 kb on - strand, within PS417_28080at 6060.890 kb on - strand, within PS417_28080at 6060.890 kb on - strand, within PS417_28080at 6060.891 kb on + strand, within PS417_28080at 6060.891 kb on + strand, within PS417_28080at 6060.891 kb on + strand, within PS417_28080at 6060.891 kb on + strandat 6060.891 kb on + strand, within PS417_28080at 6060.892 kb on - strandat 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6061.039 kb on + strand, within PS417_28080at 6061.039 kb on + strand, within PS417_28080at 6061.198 kb on - strandat 6061.260 kb on + strandat 6061.260 kb on + strandat 6061.260 kb on + strandat 6061.260 kb on + strandat 6061.261 kb on - strandat 6061.261 kb on - strandat 6061.584 kb on + strandat 6061.584 kb on + strandat 6061.714 kb on - strand, within PS417_28085at 6061.714 kb on - strand, within PS417_28085at 6061.806 kb on + strand, within PS417_28085at 6061.806 kb on + strand, within PS417_28085at 6061.900 kb on - strand, within PS417_28085at 6061.900 kb on - strand, within PS417_28085at 6061.900 kb on - strand, within PS417_28085at 6061.932 kb on + strand, within PS417_28085at 6061.932 kb on + strand, within PS417_28085at 6061.933 kb on - strand, within PS417_28085at 6061.939 kb on - strand, within PS417_28085at 6061.939 kb on - strand, within PS417_28085at 6062.163 kb on + strand, within PS417_28085at 6062.163 kb on + strand, within PS417_28085at 6062.164 kb on - strand, within PS417_28085

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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6,058,237 - PS417_28075 0.49 -1.9
6,058,564 + -0.2
6,058,659 + PS417_28075 0.75 -5.7
6,058,891 + PS417_28075 0.88 -4.9
6,058,892 - PS417_28075 0.89 -4.5
6,058,917 + -1.8
6,058,918 - -3.7
6,059,091 + -1.5
6,059,092 - -0.6
6,059,100 + -1.0
6,059,100 + -4.2
6,059,502 + PS417_28080 0.18 -6.7
6,059,502 + PS417_28080 0.18 -6.2
6,059,502 + PS417_28080 0.18 -3.6
6,059,502 + PS417_28080 0.18 -5.8
6,059,503 - PS417_28080 0.18 -4.9
6,059,503 - PS417_28080 0.18 -1.2
6,059,503 - PS417_28080 0.18 -3.2
6,059,503 - PS417_28080 0.18 -2.4
6,059,503 - PS417_28080 0.18 -2.7
6,059,503 - PS417_28080 0.18 -5.6
6,059,565 + PS417_28080 0.20 -6.2
6,059,643 + PS417_28080 0.24 -4.9
6,059,644 - PS417_28080 0.24 -3.0
6,059,644 - PS417_28080 0.24 -3.5
6,059,938 - PS417_28080 0.37 -1.3
6,060,073 - PS417_28080 0.43 -3.9
6,060,073 - PS417_28080 0.43 -3.4
6,060,073 - PS417_28080 0.43 -1.7
6,060,073 - PS417_28080 0.43 -4.1
6,060,073 - -0.4
6,060,073 - PS417_28080 0.43 -4.5
6,060,591 + PS417_28080 0.65 -2.5
6,060,591 + PS417_28080 0.65 -4.1
6,060,592 - PS417_28080 0.65 -5.5
6,060,592 - PS417_28080 0.65 -1.2
6,060,889 + PS417_28080 0.78 -4.9
6,060,889 + PS417_28080 0.78 -5.2
6,060,890 - PS417_28080 0.78 -4.3
6,060,890 - PS417_28080 0.78 -2.9
6,060,890 - PS417_28080 0.78 -4.2
6,060,891 + PS417_28080 0.78 -5.9
6,060,891 + PS417_28080 0.78 -4.7
6,060,891 + PS417_28080 0.78 -2.1
6,060,891 + -0.4
6,060,891 + PS417_28080 0.78 -6.8
6,060,892 - -1.3
6,060,892 - PS417_28080 0.78 -2.1
6,060,892 - PS417_28080 0.78 -7.5
6,060,892 - PS417_28080 0.78 -5.8
6,060,892 - PS417_28080 0.78 -3.6
6,060,892 - PS417_28080 0.78 -5.1
6,060,892 - PS417_28080 0.78 -4.3
6,060,892 - PS417_28080 0.78 -6.8
6,060,892 - PS417_28080 0.78 -6.4
6,060,892 - PS417_28080 0.78 -5.2
6,061,039 + PS417_28080 0.85 -5.7
6,061,039 + PS417_28080 0.85 -5.6
6,061,198 - -4.2
6,061,260 + -0.6
6,061,260 + -2.4
6,061,260 + -6.7
6,061,260 + -4.3
6,061,261 - -4.1
6,061,261 - -4.6
6,061,584 + -3.0
6,061,584 + -3.2
6,061,714 - PS417_28085 0.20 -4.6
6,061,714 - PS417_28085 0.20 -2.9
6,061,806 + PS417_28085 0.29 -4.1
6,061,806 + PS417_28085 0.29 -4.0
6,061,900 - PS417_28085 0.39 -5.2
6,061,900 - PS417_28085 0.39 -7.2
6,061,900 - PS417_28085 0.39 -5.7
6,061,932 + PS417_28085 0.42 -5.9
6,061,932 + PS417_28085 0.42 -1.1
6,061,933 - PS417_28085 0.42 -5.0
6,061,939 - PS417_28085 0.43 -5.3
6,061,939 - PS417_28085 0.43 -5.7
6,062,163 + PS417_28085 0.65 -4.4
6,062,163 + PS417_28085 0.65 -3.5
6,062,164 - PS417_28085 0.66 -1.8

Or see this region's nucleotide sequence