Strain Fitness in Pseudomonas simiae WCS417 around PS417_27640

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27635 and PS417_27640 overlap by 4 nucleotidesPS417_27640 and PS417_27645 are separated by 111 nucleotides PS417_27635: PS417_27635 - magnesium chelatase, at 5,958,467 to 5,959,963 _27635 PS417_27640: PS417_27640 - TetR family transcriptional regulator, at 5,959,960 to 5,960,544 _27640 PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570 _27645 Position (kb) 5959 5960 5961Strain fitness (log2 ratio) -2 -1 0 1at 5959.013 kb on + strand, within PS417_27635at 5959.014 kb on - strand, within PS417_27635at 5959.048 kb on - strand, within PS417_27635at 5959.395 kb on + strand, within PS417_27635at 5959.396 kb on - strand, within PS417_27635at 5960.418 kb on - strand, within PS417_27640at 5960.570 kb on + strandat 5960.635 kb on + strandat 5960.635 kb on + strandat 5960.636 kb on - strandat 5960.636 kb on - strandat 5960.636 kb on - strandat 5960.636 kb on - strandat 5960.749 kb on + strand, within PS417_27645at 5960.879 kb on - strand, within PS417_27645at 5960.879 kb on - strand, within PS417_27645at 5960.957 kb on - strand, within PS417_27645at 5961.301 kb on + strand, within PS417_27645at 5961.355 kb on + strand, within PS417_27645at 5961.445 kb on + strand, within PS417_27645at 5961.445 kb on + strand, within PS417_27645at 5961.446 kb on - strand, within PS417_27645at 5961.446 kb on - strand, within PS417_27645at 5961.460 kb on + strand, within PS417_27645at 5961.460 kb on + strand, within PS417_27645at 5961.461 kb on - strand, within PS417_27645

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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5,959,013 + PS417_27635 0.36 +0.4
5,959,014 - PS417_27635 0.37 -0.6
5,959,048 - PS417_27635 0.39 -0.8
5,959,395 + PS417_27635 0.62 +0.4
5,959,396 - PS417_27635 0.62 -0.1
5,960,418 - PS417_27640 0.78 -1.0
5,960,570 + -0.1
5,960,635 + -2.7
5,960,635 + -0.4
5,960,636 - +0.4
5,960,636 - -0.6
5,960,636 - +0.3
5,960,636 - +0.1
5,960,749 + PS417_27645 0.10 +0.4
5,960,879 - PS417_27645 0.24 -0.4
5,960,879 - PS417_27645 0.24 -0.2
5,960,957 - PS417_27645 0.33 +0.8
5,961,301 + PS417_27645 0.70 -1.0
5,961,355 + PS417_27645 0.76 +1.2
5,961,445 + PS417_27645 0.86 -0.0
5,961,445 + PS417_27645 0.86 -1.4
5,961,446 - PS417_27645 0.86 -0.4
5,961,446 - PS417_27645 0.86 +0.2
5,961,460 + PS417_27645 0.88 -0.1
5,961,460 + PS417_27645 0.88 -0.3
5,961,461 - PS417_27645 0.88 -0.8

Or see this region's nucleotide sequence