Strain Fitness in Pseudomonas simiae WCS417 around PS417_27605

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27595 and PS417_27600 overlap by 4 nucleotidesPS417_27600 and PS417_27605 are separated by 58 nucleotidesPS417_27605 and PS417_27610 are separated by 103 nucleotidesPS417_27610 and PS417_27615 are separated by 211 nucleotides PS417_27595: PS417_27595 - recombinase XerC, at 5,951,964 to 5,952,863 _27595 PS417_27600: PS417_27600 - HAD family hydrolase, at 5,952,860 to 5,953,555 _27600 PS417_27605: PS417_27605 - hypothetical protein, at 5,953,614 to 5,953,940 _27605 PS417_27610: PS417_27610 - hypothetical protein, at 5,954,044 to 5,954,469 _27610 PS417_27615: PS417_27615 - ammonia channel protein, at 5,954,681 to 5,956,018 _27615 Position (kb) 5953 5954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5952.702 kb on - strand, within PS417_27595at 5952.813 kb on + strandat 5952.865 kb on + strandat 5952.912 kb on + strandat 5953.137 kb on + strand, within PS417_27600at 5953.137 kb on + strand, within PS417_27600at 5953.138 kb on - strand, within PS417_27600at 5953.138 kb on - strand, within PS417_27600at 5953.138 kb on - strandat 5953.138 kb on - strand, within PS417_27600at 5953.138 kb on - strand, within PS417_27600at 5953.284 kb on - strand, within PS417_27600at 5953.284 kb on - strand, within PS417_27600at 5953.418 kb on - strand, within PS417_27600at 5953.528 kb on - strandat 5953.595 kb on + strandat 5953.619 kb on + strandat 5953.619 kb on + strandat 5953.619 kb on + strandat 5953.620 kb on - strandat 5953.902 kb on + strand, within PS417_27605at 5953.902 kb on + strand, within PS417_27605at 5953.902 kb on + strand, within PS417_27605at 5953.903 kb on - strand, within PS417_27605at 5953.903 kb on - strand, within PS417_27605at 5953.903 kb on - strand, within PS417_27605at 5953.903 kb on - strand, within PS417_27605at 5953.903 kb on - strand, within PS417_27605at 5953.903 kb on - strand, within PS417_27605at 5953.945 kb on + strandat 5953.945 kb on + strandat 5953.945 kb on + strandat 5953.946 kb on - strandat 5953.946 kb on - strandat 5953.971 kb on + strandat 5953.971 kb on + strandat 5953.971 kb on + strandat 5953.975 kb on + strandat 5953.975 kb on + strandat 5953.977 kb on + strandat 5953.977 kb on + strandat 5953.977 kb on + strandat 5954.045 kb on + strandat 5954.045 kb on + strandat 5954.045 kb on + strandat 5954.045 kb on + strandat 5954.045 kb on + strandat 5954.046 kb on - strandat 5954.079 kb on + strandat 5954.114 kb on + strand, within PS417_27610at 5954.114 kb on + strand, within PS417_27610at 5954.273 kb on + strand, within PS417_27610at 5954.273 kb on + strand, within PS417_27610at 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.469 kb on + strandat 5954.470 kb on - strandat 5954.530 kb on + strandat 5954.536 kb on + strandat 5954.536 kb on + strandat 5954.536 kb on + strandat 5954.536 kb on + strandat 5954.546 kb on + strandat 5954.547 kb on - strandat 5954.619 kb on + strandat 5954.678 kb on + strandat 5954.678 kb on + strandat 5954.678 kb on + strandat 5954.679 kb on - strandat 5954.679 kb on - strandat 5954.682 kb on + strandat 5954.682 kb on + strandat 5954.682 kb on + strandat 5954.682 kb on + strandat 5954.682 kb on + strandat 5954.683 kb on - strandat 5954.683 kb on - strandat 5954.790 kb on + strandat 5954.790 kb on + strandat 5954.791 kb on - strandat 5954.808 kb on + strandat 5954.808 kb on + strandat 5954.809 kb on - strandat 5954.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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5,952,702 - PS417_27595 0.82 +0.6
5,952,813 + +0.4
5,952,865 + -0.3
5,952,912 + +0.1
5,953,137 + PS417_27600 0.40 -2.2
5,953,137 + PS417_27600 0.40 +0.7
5,953,138 - PS417_27600 0.40 -0.2
5,953,138 - PS417_27600 0.40 +0.0
5,953,138 - +0.3
5,953,138 - PS417_27600 0.40 -0.2
5,953,138 - PS417_27600 0.40 -1.0
5,953,284 - PS417_27600 0.61 -0.1
5,953,284 - PS417_27600 0.61 -0.4
5,953,418 - PS417_27600 0.80 -0.6
5,953,528 - -0.4
5,953,595 + +1.0
5,953,619 + -1.2
5,953,619 + -0.8
5,953,619 + -0.6
5,953,620 - -0.5
5,953,902 + PS417_27605 0.88 -1.2
5,953,902 + PS417_27605 0.88 -2.1
5,953,902 + PS417_27605 0.88 -1.5
5,953,903 - PS417_27605 0.88 -3.0
5,953,903 - PS417_27605 0.88 -0.9
5,953,903 - PS417_27605 0.88 -1.8
5,953,903 - PS417_27605 0.88 -1.0
5,953,903 - PS417_27605 0.88 -2.2
5,953,903 - PS417_27605 0.88 -2.1
5,953,945 + -1.9
5,953,945 + -1.1
5,953,945 + -1.7
5,953,946 - -1.9
5,953,946 - -1.2
5,953,971 + -0.1
5,953,971 + -1.5
5,953,971 + -0.4
5,953,975 + -1.8
5,953,975 + -1.0
5,953,977 + -1.3
5,953,977 + -1.6
5,953,977 + -1.4
5,954,045 + -1.6
5,954,045 + -1.7
5,954,045 + -1.8
5,954,045 + -1.4
5,954,045 + -2.3
5,954,046 - +0.2
5,954,079 + +1.9
5,954,114 + PS417_27610 0.16 -2.1
5,954,114 + PS417_27610 0.16 -1.5
5,954,273 + PS417_27610 0.54 -1.1
5,954,273 + PS417_27610 0.54 -1.8
5,954,469 + -1.0
5,954,469 + +0.2
5,954,469 + -2.2
5,954,469 + -0.3
5,954,469 + -0.3
5,954,469 + -1.4
5,954,469 + -1.0
5,954,469 + -2.5
5,954,469 + -0.8
5,954,469 + -2.1
5,954,470 - -0.3
5,954,530 + +0.2
5,954,536 + -0.4
5,954,536 + +0.6
5,954,536 + -0.6
5,954,536 + +0.2
5,954,546 + -2.2
5,954,547 - -0.2
5,954,619 + -0.9
5,954,678 + -0.6
5,954,678 + +0.3
5,954,678 + +0.2
5,954,679 - -0.4
5,954,679 - +0.4
5,954,682 + +0.2
5,954,682 + -0.6
5,954,682 + -0.3
5,954,682 + -0.6
5,954,682 + -0.6
5,954,683 - +0.3
5,954,683 - -0.4
5,954,790 + -0.6
5,954,790 + -1.2
5,954,791 - -0.3
5,954,808 + -0.5
5,954,808 + +0.4
5,954,809 - -0.7
5,954,809 - +0.2

Or see this region's nucleotide sequence