Experiment: Fraxetin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27595 and PS417_27600 overlap by 4 nucleotides PS417_27600 and PS417_27605 are separated by 58 nucleotides PS417_27605 and PS417_27610 are separated by 103 nucleotides PS417_27610 and PS417_27615 are separated by 211 nucleotides
PS417_27595: PS417_27595 - recombinase XerC, at 5,951,964 to 5,952,863
_27595
PS417_27600: PS417_27600 - HAD family hydrolase, at 5,952,860 to 5,953,555
_27600
PS417_27605: PS417_27605 - hypothetical protein, at 5,953,614 to 5,953,940
_27605
PS417_27610: PS417_27610 - hypothetical protein, at 5,954,044 to 5,954,469
_27610
PS417_27615: PS417_27615 - ammonia channel protein, at 5,954,681 to 5,956,018
_27615
Position (kb)
5953
5954 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5952.702 kb on - strand, within PS417_27595 at 5952.813 kb on + strand at 5952.865 kb on + strand at 5952.912 kb on + strand at 5953.137 kb on + strand, within PS417_27600 at 5953.137 kb on + strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.284 kb on - strand, within PS417_27600 at 5953.284 kb on - strand, within PS417_27600 at 5953.418 kb on - strand, within PS417_27600 at 5953.528 kb on - strand at 5953.595 kb on + strand at 5953.619 kb on + strand at 5953.619 kb on + strand at 5953.619 kb on + strand at 5953.620 kb on - strand at 5953.902 kb on + strand, within PS417_27605 at 5953.902 kb on + strand, within PS417_27605 at 5953.902 kb on + strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.903 kb on - strand, within PS417_27605 at 5953.945 kb on + strand at 5953.945 kb on + strand at 5953.945 kb on + strand at 5953.946 kb on - strand at 5953.946 kb on - strand at 5953.971 kb on + strand at 5953.971 kb on + strand at 5953.971 kb on + strand at 5953.975 kb on + strand at 5953.975 kb on + strand at 5953.977 kb on + strand at 5953.977 kb on + strand at 5953.977 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.045 kb on + strand at 5954.046 kb on - strand at 5954.079 kb on + strand at 5954.114 kb on + strand, within PS417_27610 at 5954.114 kb on + strand, within PS417_27610 at 5954.273 kb on + strand, within PS417_27610 at 5954.273 kb on + strand, within PS417_27610 at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.469 kb on + strand at 5954.470 kb on - strand at 5954.530 kb on + strand at 5954.536 kb on + strand at 5954.536 kb on + strand at 5954.536 kb on + strand at 5954.536 kb on + strand at 5954.546 kb on + strand at 5954.547 kb on - strand at 5954.619 kb on + strand at 5954.678 kb on + strand at 5954.678 kb on + strand at 5954.678 kb on + strand at 5954.679 kb on - strand at 5954.679 kb on - strand at 5954.682 kb on + strand at 5954.682 kb on + strand at 5954.682 kb on + strand at 5954.682 kb on + strand at 5954.682 kb on + strand at 5954.683 kb on - strand at 5954.683 kb on - strand at 5954.790 kb on + strand at 5954.790 kb on + strand at 5954.791 kb on - strand at 5954.808 kb on + strand at 5954.808 kb on + strand at 5954.809 kb on - strand at 5954.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress remove 5,952,702 - PS417_27595 0.82 +0.6 5,952,813 + +0.4 5,952,865 + -0.3 5,952,912 + +0.1 5,953,137 + PS417_27600 0.40 -2.2 5,953,137 + PS417_27600 0.40 +0.7 5,953,138 - PS417_27600 0.40 -0.2 5,953,138 - PS417_27600 0.40 +0.0 5,953,138 - +0.3 5,953,138 - PS417_27600 0.40 -0.2 5,953,138 - PS417_27600 0.40 -1.0 5,953,284 - PS417_27600 0.61 -0.1 5,953,284 - PS417_27600 0.61 -0.4 5,953,418 - PS417_27600 0.80 -0.6 5,953,528 - -0.4 5,953,595 + +1.0 5,953,619 + -1.2 5,953,619 + -0.8 5,953,619 + -0.6 5,953,620 - -0.5 5,953,902 + PS417_27605 0.88 -1.2 5,953,902 + PS417_27605 0.88 -2.1 5,953,902 + PS417_27605 0.88 -1.5 5,953,903 - PS417_27605 0.88 -3.0 5,953,903 - PS417_27605 0.88 -0.9 5,953,903 - PS417_27605 0.88 -1.8 5,953,903 - PS417_27605 0.88 -1.0 5,953,903 - PS417_27605 0.88 -2.2 5,953,903 - PS417_27605 0.88 -2.1 5,953,945 + -1.9 5,953,945 + -1.1 5,953,945 + -1.7 5,953,946 - -1.9 5,953,946 - -1.2 5,953,971 + -0.1 5,953,971 + -1.5 5,953,971 + -0.4 5,953,975 + -1.8 5,953,975 + -1.0 5,953,977 + -1.3 5,953,977 + -1.6 5,953,977 + -1.4 5,954,045 + -1.6 5,954,045 + -1.7 5,954,045 + -1.8 5,954,045 + -1.4 5,954,045 + -2.3 5,954,046 - +0.2 5,954,079 + +1.9 5,954,114 + PS417_27610 0.16 -2.1 5,954,114 + PS417_27610 0.16 -1.5 5,954,273 + PS417_27610 0.54 -1.1 5,954,273 + PS417_27610 0.54 -1.8 5,954,469 + -1.0 5,954,469 + +0.2 5,954,469 + -2.2 5,954,469 + -0.3 5,954,469 + -0.3 5,954,469 + -1.4 5,954,469 + -1.0 5,954,469 + -2.5 5,954,469 + -0.8 5,954,469 + -2.1 5,954,470 - -0.3 5,954,530 + +0.2 5,954,536 + -0.4 5,954,536 + +0.6 5,954,536 + -0.6 5,954,536 + +0.2 5,954,546 + -2.2 5,954,547 - -0.2 5,954,619 + -0.9 5,954,678 + -0.6 5,954,678 + +0.3 5,954,678 + +0.2 5,954,679 - -0.4 5,954,679 - +0.4 5,954,682 + +0.2 5,954,682 + -0.6 5,954,682 + -0.3 5,954,682 + -0.6 5,954,682 + -0.6 5,954,683 - +0.3 5,954,683 - -0.4 5,954,790 + -0.6 5,954,790 + -1.2 5,954,791 - -0.3 5,954,808 + -0.5 5,954,808 + +0.4 5,954,809 - -0.7 5,954,809 - +0.2
Or see this region's nucleotide sequence