Strain Fitness in Pseudomonas simiae WCS417 around PS417_27385

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27380 and PS417_27385 are separated by 255 nucleotidesPS417_27385 and PS417_27390 are separated by 17 nucleotidesPS417_27390 and PS417_27395 overlap by 4 nucleotides PS417_27380: PS417_27380 - GntR family transcriptional regulator, at 5,908,060 to 5,908,755 _27380 PS417_27385: PS417_27385 - amino acid ABC transporter substrate-binding protein, at 5,909,011 to 5,909,796 _27385 PS417_27390: PS417_27390 - ABC transporter permease, at 5,909,814 to 5,910,482 _27390 PS417_27395: PS417_27395 - amino acid ABC transporter permease, at 5,910,479 to 5,911,129 _27395 Position (kb) 5909 5910Strain fitness (log2 ratio) -1 0 1 2at 5908.052 kb on - strandat 5908.389 kb on + strand, within PS417_27380at 5908.515 kb on + strand, within PS417_27380at 5908.795 kb on - strandat 5908.917 kb on - strandat 5909.023 kb on + strandat 5909.545 kb on + strand, within PS417_27385at 5909.585 kb on + strand, within PS417_27385at 5909.585 kb on + strand, within PS417_27385at 5909.585 kb on + strand, within PS417_27385at 5909.586 kb on - strand, within PS417_27385at 5909.662 kb on + strand, within PS417_27385at 5909.662 kb on + strand, within PS417_27385at 5909.662 kb on + strand, within PS417_27385at 5909.663 kb on - strand, within PS417_27385at 5909.663 kb on - strand, within PS417_27385at 5909.663 kb on - strand, within PS417_27385at 5909.758 kb on - strandat 5909.992 kb on - strand, within PS417_27390at 5909.992 kb on - strand, within PS417_27390at 5909.992 kb on - strand, within PS417_27390at 5910.384 kb on + strand, within PS417_27390at 5910.385 kb on - strand, within PS417_27390at 5910.405 kb on + strand, within PS417_27390at 5910.405 kb on + strand, within PS417_27390at 5910.405 kb on + strand, within PS417_27390at 5910.405 kb on + strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.406 kb on - strand, within PS417_27390at 5910.413 kb on + strand, within PS417_27390at 5910.413 kb on + strand, within PS417_27390at 5910.645 kb on - strand, within PS417_27395at 5910.725 kb on - strand, within PS417_27395at 5910.725 kb on - strand, within PS417_27395

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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5,908,052 - -0.3
5,908,389 + PS417_27380 0.47 -0.2
5,908,515 + PS417_27380 0.65 -0.1
5,908,795 - +1.5
5,908,917 - +0.1
5,909,023 + -0.9
5,909,545 + PS417_27385 0.68 +2.5
5,909,585 + PS417_27385 0.73 +0.1
5,909,585 + PS417_27385 0.73 +0.0
5,909,585 + PS417_27385 0.73 +1.4
5,909,586 - PS417_27385 0.73 -0.2
5,909,662 + PS417_27385 0.83 -0.2
5,909,662 + PS417_27385 0.83 -0.2
5,909,662 + PS417_27385 0.83 +0.8
5,909,663 - PS417_27385 0.83 +0.2
5,909,663 - PS417_27385 0.83 +0.2
5,909,663 - PS417_27385 0.83 -0.0
5,909,758 - -0.7
5,909,992 - PS417_27390 0.27 +0.2
5,909,992 - PS417_27390 0.27 -1.3
5,909,992 - PS417_27390 0.27 -0.2
5,910,384 + PS417_27390 0.85 -0.7
5,910,385 - PS417_27390 0.85 +0.2
5,910,405 + PS417_27390 0.88 +0.0
5,910,405 + PS417_27390 0.88 +0.4
5,910,405 + PS417_27390 0.88 -0.5
5,910,405 + PS417_27390 0.88 +0.1
5,910,406 - PS417_27390 0.88 +0.2
5,910,406 - PS417_27390 0.88 -1.5
5,910,406 - PS417_27390 0.88 +1.0
5,910,406 - PS417_27390 0.88 -0.0
5,910,406 - PS417_27390 0.88 +0.4
5,910,406 - PS417_27390 0.88 -0.4
5,910,406 - PS417_27390 0.88 -0.3
5,910,413 + PS417_27390 0.90 +0.0
5,910,413 + PS417_27390 0.90 +0.0
5,910,645 - PS417_27395 0.25 +0.1
5,910,725 - PS417_27395 0.38 +0.2
5,910,725 - PS417_27395 0.38 -0.3

Or see this region's nucleotide sequence