Experiment: Fraxetin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27380 and PS417_27385 are separated by 255 nucleotides PS417_27385 and PS417_27390 are separated by 17 nucleotides PS417_27390 and PS417_27395 overlap by 4 nucleotides
PS417_27380: PS417_27380 - GntR family transcriptional regulator, at 5,908,060 to 5,908,755
_27380
PS417_27385: PS417_27385 - amino acid ABC transporter substrate-binding protein, at 5,909,011 to 5,909,796
_27385
PS417_27390: PS417_27390 - ABC transporter permease, at 5,909,814 to 5,910,482
_27390
PS417_27395: PS417_27395 - amino acid ABC transporter permease, at 5,910,479 to 5,911,129
_27395
Position (kb)
5909
5910 Strain fitness (log2 ratio)
-1
0
1
2 at 5908.052 kb on - strand at 5908.389 kb on + strand, within PS417_27380 at 5908.515 kb on + strand, within PS417_27380 at 5908.795 kb on - strand at 5908.917 kb on - strand at 5909.023 kb on + strand at 5909.545 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.586 kb on - strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.758 kb on - strand at 5909.992 kb on - strand, within PS417_27390 at 5909.992 kb on - strand, within PS417_27390 at 5909.992 kb on - strand, within PS417_27390 at 5910.384 kb on + strand, within PS417_27390 at 5910.385 kb on - strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.413 kb on + strand, within PS417_27390 at 5910.413 kb on + strand, within PS417_27390 at 5910.645 kb on - strand, within PS417_27395 at 5910.725 kb on - strand, within PS417_27395 at 5910.725 kb on - strand, within PS417_27395
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress remove 5,908,052 - -0.3 5,908,389 + PS417_27380 0.47 -0.2 5,908,515 + PS417_27380 0.65 -0.1 5,908,795 - +1.5 5,908,917 - +0.1 5,909,023 + -0.9 5,909,545 + PS417_27385 0.68 +2.5 5,909,585 + PS417_27385 0.73 +0.1 5,909,585 + PS417_27385 0.73 +0.0 5,909,585 + PS417_27385 0.73 +1.4 5,909,586 - PS417_27385 0.73 -0.2 5,909,662 + PS417_27385 0.83 -0.2 5,909,662 + PS417_27385 0.83 -0.2 5,909,662 + PS417_27385 0.83 +0.8 5,909,663 - PS417_27385 0.83 +0.2 5,909,663 - PS417_27385 0.83 +0.2 5,909,663 - PS417_27385 0.83 -0.0 5,909,758 - -0.7 5,909,992 - PS417_27390 0.27 +0.2 5,909,992 - PS417_27390 0.27 -1.3 5,909,992 - PS417_27390 0.27 -0.2 5,910,384 + PS417_27390 0.85 -0.7 5,910,385 - PS417_27390 0.85 +0.2 5,910,405 + PS417_27390 0.88 +0.0 5,910,405 + PS417_27390 0.88 +0.4 5,910,405 + PS417_27390 0.88 -0.5 5,910,405 + PS417_27390 0.88 +0.1 5,910,406 - PS417_27390 0.88 +0.2 5,910,406 - PS417_27390 0.88 -1.5 5,910,406 - PS417_27390 0.88 +1.0 5,910,406 - PS417_27390 0.88 -0.0 5,910,406 - PS417_27390 0.88 +0.4 5,910,406 - PS417_27390 0.88 -0.4 5,910,406 - PS417_27390 0.88 -0.3 5,910,413 + PS417_27390 0.90 +0.0 5,910,413 + PS417_27390 0.90 +0.0 5,910,645 - PS417_27395 0.25 +0.1 5,910,725 - PS417_27395 0.38 +0.2 5,910,725 - PS417_27395 0.38 -0.3
Or see this region's nucleotide sequence